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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : nusG.2
DDBJ      :nusG         transcription antitermination protein NusG
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  897/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
b.34.5d.58.42
:176 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   57->176 1nppB PDBj 8e-28 46.6 %
:RPS:PDB   55->176 2ckkA PDBj 5e-24 13.2 %
:RPS:SCOP  1->115 1m1gA3  d.58.42.1 * 3e-28 31.0 %
:RPS:SCOP  119->176 1m1gA2  b.34.5.4 * 3e-18 56.9 %
:HMM:SCOP  2->113 1nz8A_ d.58.42.1 * 5.4e-35 47.3 %
:HMM:SCOP  119->176 1m1gA2 b.34.5.4 * 3e-20 60.3 %
:RPS:PFM   3->100 PF02357 * NusG 3e-18 48.9 %
:HMM:PFM   4->100 PF02357 * NusG 6.3e-29 51.7 87/92  
:HMM:PFM   126->155 PF00467 * KOW 4.5e-08 42.3 26/32  
:BLT:SWISS 4->176 NUSG_VIBCH 3e-51 53.8 %
:PROS 159->168|PS01014|NUSG
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87721.1 GT:GENE nusG.2 GT:PRODUCT transcription antitermination protein NusG GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1934185..1934715) GB:FROM 1934185 GB:TO 1934715 GB:DIRECTION - GB:GENE nusG GB:PRODUCT transcription antitermination protein NusG GB:PROTEIN_ID AAK87721.1 GB:DB_XREF GI:15157085 GB:GENE:GENE nusG LENGTH 176 SQ:AASEQ MAARWYIVHAYSNFEKKVAESIEEKARQKGLSHLFEKILVPTEKVVEVRRGRKVDSERKFFPGYVLVRANLTDEAYHLIKNTPKVTGFLGSDSKPVPIPDYEADRILGQVQEGVERPKSSVSFEIGEQVRVSDGPFASFNGVVQDVDEERSRLKVEVSIFGRATPVELEYNQVEKV GT:EXON 1|1-176:0| BL:SWS:NREP 1 BL:SWS:REP 4->176|NUSG_VIBCH|3e-51|53.8|173/182| PROS 159->168|PS01014|NUSG|PDOC00775| SEG 43->54|ekvvevrrgrkv| BL:PDB:NREP 1 BL:PDB:REP 57->176|1nppB|8e-28|46.6|118/241| RP:PDB:NREP 1 RP:PDB:REP 55->176|2ckkA|5e-24|13.2|114/120| RP:PFM:NREP 1 RP:PFM:REP 3->100|PF02357|3e-18|48.9|90/92|NusG| HM:PFM:NREP 2 HM:PFM:REP 4->100|PF02357|6.3e-29|51.7|87/92|NusG| HM:PFM:REP 126->155|PF00467|4.5e-08|42.3|26/32|KOW| GO:PFM:NREP 2 GO:PFM GO:0003711|"GO:transcription elongation regulator activity"|PF02357|IPR006645| GO:PFM GO:0032968|"GO:positive regulation of RNA elongation from RNA polymerase II promoter"|PF02357|IPR006645| RP:SCP:NREP 2 RP:SCP:REP 1->115|1m1gA3|3e-28|31.0|100/101|d.58.42.1| RP:SCP:REP 119->176|1m1gA2|3e-18|56.9|58/58|b.34.5.4| HM:SCP:REP 2->113|1nz8A_|5.4e-35|47.3|112/0|d.58.42.1|1/1|N-utilization substance G protein NusG, N-terminal domain| HM:SCP:REP 119->176|1m1gA2|3e-20|60.3|58/58|b.34.5.4|1/1|Translation proteins SH3-like domain| OP:NHOMO 919 OP:NHOMOORG 901 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111114111111111111111111111111111111111211111112231111111111111111111111111111111111111111-111115111111111111111111111111111121111111111111111111111111111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11--1--11111----1111111111111111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------1-----2---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 173 STR:RPRED 98.3 SQ:SECSTR ###EEEEEEEcTTcHHHHHHHHHHHHHHHTcTTTcccccccccccccccccccTcccccccTTTcEEEEcccTTcGGGTTcEEEEEEEETTTEEEEETTTccEEEEEHHHHHccGGGEEEccccTTcEEEEcccTTTTcEEEEEEEEGGGTEEEEEcccTTTTcEEEEEGGGEEEc DISOP:02AL 113-114| PSIPRED ccccEEEEEEEcccHHHHHHHHHHHHHHccccccEEEEEEccEEEEEEEcccEEEEEEcccccEEEEEEEEcccEEEEEEccccEEEEEcccccEEEccHHHHHHHHHHHcccccccccEEccccccEEEEEEccccccEEEEEEEcccccEEEEEEEEcccEEEEEEcHHHHccc //