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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : omp1
DDBJ      :omp1         group 1 outer membrane protein precursor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  586/915 : Eukaryota  78/199 : Viruses  0/175   --->[See Alignment]
a.250.1d.54.1f.4.3
:774 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->361 3efcA PDBj 5e-34 25.2 %
:RPS:PDB   40->361 3efcA PDBj 1e-51 23.7 %
:RPS:SCOP  42->336 2j0oA1  a.250.1.1 * 4e-24 6.2 %
:RPS:SCOP  412->456 1wueA2  d.54.1.1 * 5e-04 13.6 %
:RPS:SCOP  471->609 1af6A  f.4.3.2 * 3e-11 12.3 %
:RPS:PFM   187->274 PF07244 * Surf_Ag_VNR 5e-05 31.8 %
:RPS:PFM   359->407 PF07244 * Surf_Ag_VNR 5e-05 44.9 %
:RPS:PFM   459->773 PF01103 * Bac_surface_Ag 1e-42 36.6 %
:HMM:PFM   459->774 PF01103 * Bac_surface_Ag 6.7e-88 38.1 312/323  
:HMM:PFM   39->105 PF07244 * Surf_Ag_VNR 3.6e-12 23.9 67/78  
:HMM:PFM   108->183 PF07244 * Surf_Ag_VNR 5.9e-14 24.0 75/78  
:HMM:PFM   187->274 PF07244 * Surf_Ag_VNR 1.7e-16 36.8 76/78  
:HMM:PFM   281->356 PF07244 * Surf_Ag_VNR 2.5e-09 23.0 74/78  
:HMM:PFM   359->430 PF07244 * Surf_Ag_VNR 2.3e-18 34.3 70/78  
:BLT:SWISS 40->774 OMP85_NEIMB 2e-90 30.5 %
:PROS 17->32|PS00012|PHOSPHOPANTETHEINE
:REPEAT 2|40->106|361->432
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87173.1 GT:GENE omp1 GT:PRODUCT group 1 outer membrane protein precursor GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1374514..1376838 GB:FROM 1374514 GB:TO 1376838 GB:DIRECTION + GB:GENE omp1 GB:PRODUCT group 1 outer membrane protein precursor GB:PROTEIN_ID AAK87173.1 GB:DB_XREF GI:15156447 GB:GENE:GENE omp1 LENGTH 774 SQ:AASEQ MKAGSRFLNAVSAVALSAGVSSVAGLGVLASAGVANAAVISKIDVRGAERSGADSVRSNITIAPGKNFSNSDIDESVKRLYATGYFSNVSMRVSGSTLVVTVNENQLVNQVVFNGNRKIKDDKLAGIVQTQPMGPFNQAIVTADIARIKEAYSAIGRSDVEITTQTVSVGQGRVNIAFVINEGERTKIGRIDFIGNNSYSDGRLAAVINTKKSNMLSFLTRKDVYNEDKLRADEEALRQFYYNRGYADFRVVSSDAVLDESKNEYTISITVDEGKKYDFGNVAVESTVPGVDGSELQGLVETRQGASYSAKEVQQSMEAISKRVAGEGYPFARVTPRGDRDMSGNTIGVTYIVDQGERAYVERIEIRGNTRTRDYVIRREFDISEGDAFNQTIITAAKRRLEALGYFSKVNISTAGGSAPDRVVIVVDVEDQSTGSFGIGAGYSQNDGVLLEASVEEKNFLGRGQYIRVAAGAGEDDARTYSLSFTEPYFLGYRLAAGFDLFKNQSKSEDYYNYDEQGFALRVTAPITENLSTTFKYTYKQINYEGKGDWQNNANLAEPYQALIRGEDWTQSILSNTLNYNTLDDRNMPREGWQAALTNEFAGLGGDSEYYKIYAKARYYYTLSDEYDVIGSLTGQAGHVMPTGDNLLVFDQFKFGGRQVRGFKNDGIGPRIGSDSIGGTTYFAASAEVTAPMPGVPEDFGLRLAGFVDAGTMYGNKVSTSQTVKDDNSIRASAGIGVMWASPFGPIRVDYAIPIAKEDYDEEQRFRFGMSNTF GT:EXON 1|1-774:0| BL:SWS:NREP 1 BL:SWS:REP 40->774|OMP85_NEIMB|2e-90|30.5|728/797| PROS 17->32|PS00012|PHOSPHOPANTETHEINE|PDOC00012| NREPEAT 1 REPEAT 2|40->106|361->432| SEG 8->39|lnavsavalsagvssvaglgvlasagvanaav| SEG 610->621|yykiyakaryyy| BL:PDB:NREP 1 BL:PDB:REP 40->361|3efcA|5e-34|25.2|321/327| RP:PDB:NREP 1 RP:PDB:REP 40->361|3efcA|1e-51|23.7|321/327| RP:PFM:NREP 3 RP:PFM:REP 187->274|PF07244|5e-05|31.8|76/77|Surf_Ag_VNR| RP:PFM:REP 359->407|PF07244|5e-05|44.9|49/77|Surf_Ag_VNR| RP:PFM:REP 459->773|PF01103|1e-42|36.6|306/317|Bac_surface_Ag| HM:PFM:NREP 6 HM:PFM:REP 459->774|PF01103|6.7e-88|38.1|312/323|Bac_surface_Ag| HM:PFM:REP 39->105|PF07244|3.6e-12|23.9|67/78|Surf_Ag_VNR| HM:PFM:REP 108->183|PF07244|5.9e-14|24.0|75/78|Surf_Ag_VNR| HM:PFM:REP 187->274|PF07244|1.7e-16|36.8|76/78|Surf_Ag_VNR| HM:PFM:REP 281->356|PF07244|2.5e-09|23.0|74/78|Surf_Ag_VNR| HM:PFM:REP 359->430|PF07244|2.3e-18|34.3|70/78|Surf_Ag_VNR| GO:PFM:NREP 3 GO:PFM GO:0019867|"GO:outer membrane"|PF07244|IPR010827| GO:PFM GO:0019867|"GO:outer membrane"|PF07244|IPR010827| GO:PFM GO:0019867|"GO:outer membrane"|PF01103|IPR000184| RP:SCP:NREP 3 RP:SCP:REP 42->336|2j0oA1|4e-24|6.2|257/284|a.250.1.1| RP:SCP:REP 412->456|1wueA2|5e-04|13.6|44/126|d.54.1.1| RP:SCP:REP 471->609|1af6A|3e-11|12.3|138/421|f.4.3.2| OP:NHOMO 828 OP:NHOMOORG 664 OP:PATTERN -------------------------------------------------------------------- 233--------------------------------------------------------------------------------111111111111111-1111111112111111111111111111111111121-----------1-11111111-11--1-11111311---111-1--1-----111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------11122111211121212331111112122222222222-32222221121122212222222222221211212212122222222211211221111111111111111111111111111111111111111111111111111122111111121111111111111111111211111111111111111121111222111111211111111111111122111121111111111111111111111112111111111211111111111111111111111-111111--11121111212222222222-222222222222222222222211111212222222212222122222222111111111111111111111-1111111111111111111111111111111111111111111121222111221111111111111111111111111111111111111111111111111111111111------------------------------------121 ------------111--111----1--11111111111-111111111---11------111--1---1---1-1------------1-----111-------212-1--2-1211-------1-1-1-271-212----1-----11--1--1-----11-1111--------1-----111--1--21----1--1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 324 STR:RPRED 41.9 SQ:SECSTR #######################################EEEEEccccccccHHHHHHTccccTTccccTHHHHHHHHHHHHHccEEEEEEEccccEEEEEEEEccEEEEEEEEccTTccHHHHHHHHHHHccccccGGGHHHHHHHHHHHHHTTTccccEEEEEccccTTcEEEEEEEEEccccccccccEEEccccccTTTTGGGcccccccccccccTTTHHHHHHHHHHHHHHHHHHHHTTcTTcEEEEcccEEcTTcccEEcEEEEEcccccEEEEEcccccccTTcHHHHHHTccccccccccHHHHHHHHHHHHHHHHHTTccccEEEEEEEEETTTTEEEEEEEEEccccccccc########################################################################################################################################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-3| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEccHHHHHHHccccccccccHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEEEccEEEEEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEEEEEcccEEEEEEEEEEEcccccHHHHHHHHHcccccEEEEcccccEEcHHHHHHHHHHHHHHHHHccEEEEEEEccccEEcccccEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHccccEEcHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEcccccEEEEEEEEccccEEEEEEEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEccccEEEEEEEEEEccccccccEEEEEEEEccEEEEEEEEEEEccccccccEEEEEEEEEEEEccccccEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEcccccEEccccccccHHHccccccEEEEEEEEEEEEEEccccccccEEEEEEEccEEEcccccEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEccccccccEEEEEccccEEccEEccccccccccccccEEEEEEEEEEEEEEEccccccccEEEEEEEEEEEEEcccccccccccccccEEEEEEEEEEEEccEEEEEEEEEEcccccccccEEEEEEEEEEEc //