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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ompA
DDBJ      :ompA         porin
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  552/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
d.79.7
:220 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   79->218 2k1sA PDBj 6e-39 53.6 %
:RPS:PDB   109->220 3cypB PDBj 7e-30 25.0 %
:RPS:SCOP  109->214 1oapA  d.79.7.1 * 2e-30 28.3 %
:HMM:SCOP  100->219 1r1mA_ d.79.7.1 * 6.4e-35 44.2 %
:RPS:PFM   115->211 PF00691 * OmpA 1e-15 44.7 %
:HMM:PFM   114->209 PF00691 * OmpA 5e-24 42.1 95/97  
:HMM:PFM   33->81 PF05433 * Rick_17kDa_Anti 4e-11 61.4 44/44  
:HMM:PFM   3->38 PF08085 * Entericidin 0.00012 56.5 23/42  
:HMM:PFM   61->106 PF04206 * MtrE 0.00066 38.6 44/269  
:BLT:SWISS 79->218 YIAD_ECOLI 2e-38 53.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88440.1 GT:GENE ompA GT:PRODUCT porin GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2707488..2708150) GB:FROM 2707488 GB:TO 2708150 GB:DIRECTION - GB:GENE ompA GB:PRODUCT porin GB:PROTEIN_ID AAK88440.1 GB:DB_XREF GI:15157937 GB:GENE:GENE ompA LENGTH 220 SQ:AASEQ MIKKIAIVALCGTYLSACTTTDPYTGEQKMSNTAGGAGIGAVVGALGGLAVGGSPVGRRNAALIGAGIGALAGGAIGNYMDGQEAELRAQLQGTGVSVTRRGDSIVLNMPSNITFATDQDQVIPPFYQTLDSVAIVLNKFNRTLIDINGHTDSTGSLQHNQALSERRAASVANYLGARGVDQRRISTLGFGPSQPIASNATSDGRAQNRRVEVLISPLKG GT:EXON 1|1-220:0| BL:SWS:NREP 1 BL:SWS:REP 79->218|YIAD_ECOLI|2e-38|53.6|140/219| SEG 34->53|aggagigavvgalgglavgg| SEG 61->77|aaligagigalaggaig| BL:PDB:NREP 1 BL:PDB:REP 79->218|2k1sA|6e-39|53.6|140/149| RP:PDB:NREP 1 RP:PDB:REP 109->220|3cypB|7e-30|25.0|112/129| RP:PFM:NREP 1 RP:PFM:REP 115->211|PF00691|1e-15|44.7|94/97|OmpA| HM:PFM:NREP 4 HM:PFM:REP 114->209|PF00691|5e-24|42.1|95/97|OmpA| HM:PFM:REP 33->81|PF05433|4e-11|61.4|44/44|Rick_17kDa_Anti| HM:PFM:REP 3->38|PF08085|0.00012|56.5|23/42|Entericidin| HM:PFM:REP 61->106|PF04206|0.00066|38.6|44/269|MtrE| GO:PFM:NREP 1 GO:PFM GO:0009279|"GO:cell outer membrane"|PF00691|IPR006665| RP:SCP:NREP 1 RP:SCP:REP 109->214|1oapA|2e-30|28.3|106/108|d.79.7.1| HM:SCP:REP 100->219|1r1mA_|6.4e-35|44.2|120/140|d.79.7.1|1/1|OmpA-like| OP:NHOMO 1833 OP:NHOMOORG 556 OP:PATTERN -------------------------------------------------------------------- 344--------------11-1---1-111111--------1212---1---------------1---11-1-------------1---1111-4111--357554AN92911111111111111-11434112321---------1-------12-----------2---1-1-----1-----------411---------1-------1--1---------11--------------------------------------------------------------------------------------------------12--3-------2-2-111----1-1---11-11--1-11------1-6521-3223--11-2-4434434344422222222224---1--2-115313114422433332234255344444461111111111112322------------11--111111111----15445113323C8888963333665645542474244431132232533324441332632422221111111233327625342135331196A5653454484EL4142211111112111111111223--22631355331336879724899A75776769--33525-1----22112223334344443-33333333343433333326553211-2323332332333333432133331-465566546765111422222444424844111131122211112566665554575AAA9B8ACBAAAB9777---------1677455555BA57744232332332222--11665555111-1--132------------------------------------3-1 -------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------1--------------1-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 143 STR:RPRED 65.0 SQ:SECSTR #############################################################################TEEEEEEEEEEEccTccTcccEEccEEEHTTcccEEcccTTcccccHHHHHHHHHHHHHHTTcTTcEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHTTccGGGEEEEEcTTccccccTTcHHHHHHHcEEEEEEEccHH DISOP:02AL 1-2, 84-96| PSIPRED cHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEEEEEEccEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEEEcccccccccccHHHHHcccEEEEEEEcccc //