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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : oxyR.1
DDBJ      :oxyR         transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  714/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:295 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->76 1iz1B PDBj 8e-07 34.2 %
:BLT:PDB   93->289 1i69B PDBj 1e-13 26.0 %
:RPS:PDB   3->236 1b9nB PDBj 7e-25 12.4 %
:RPS:SCOP  1->107 1b9mA1  a.4.5.8 * 7e-22 17.8 %
:RPS:SCOP  93->289 1i69A  c.94.1.1 * 2e-27 25.5 %
:HMM:SCOP  4->115 1b9mA1 a.4.5.8 * 7.2e-29 48.6 %
:HMM:SCOP  90->294 1uthA_ c.94.1.1 * 2e-40 30.2 %
:RPS:PFM   6->64 PF00126 * HTH_1 3e-10 57.6 %
:RPS:PFM   94->284 PF03466 * LysR_substrate 6e-16 35.1 %
:HMM:PFM   90->289 PF03466 * LysR_substrate 4.8e-49 34.0 200/209  
:HMM:PFM   6->65 PF00126 * HTH_1 6.9e-25 56.7 60/60  
:BLT:SWISS 4->241 RBCR_CHRVI 4e-29 29.5 %
:PROS 47->64|PS00216|SUGAR_TRANSPORT_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86680.2 GT:GENE oxyR.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(870752..871639) GB:FROM 870752 GB:TO 871639 GB:DIRECTION - GB:GENE oxyR GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID AAK86680.2 GB:DB_XREF GI:159139817 GB:GENE:GENE oxyR LENGTH 295 SQ:AASEQ MIDLDLRQMRSFMDVADLGSFSAAADKAGLTQPAVSLHIRLLEKQLGVRLIERVGRRAQPTAAGRDFLIHARRISEEVAHAIETVAPHRSGATGSLRIGTGATACIYLLPPVLGRIRQAMPGIDIVVQTGNTHDILRLLEANTIDAAVVALPASGRSLDIRDIHLDELVAVFPRGAVPARTTLTAETLSTRSLLLYEGGNTRKLVDQWFSASGRTVQPAMELGSVEAIKKLAGAGLGLAVVPRMAVEHEGAASGLEWRSLEPPLERRIALAMRRDKHMTAPLRALAGALPDVRKG GT:EXON 1|1-295:0| BL:SWS:NREP 1 BL:SWS:REP 4->241|RBCR_CHRVI|4e-29|29.5|237/302| PROS 47->64|PS00216|SUGAR_TRANSPORT_1|PDOC00190| BL:PDB:NREP 2 BL:PDB:REP 4->76|1iz1B|8e-07|34.2|73/294| BL:PDB:REP 93->289|1i69B|1e-13|26.0|192/206| RP:PDB:NREP 1 RP:PDB:REP 3->236|1b9nB|7e-25|12.4|226/245| RP:PFM:NREP 2 RP:PFM:REP 6->64|PF00126|3e-10|57.6|59/60|HTH_1| RP:PFM:REP 94->284|PF03466|6e-16|35.1|191/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 90->289|PF03466|4.8e-49|34.0|200/209|LysR_substrate| HM:PFM:REP 6->65|PF00126|6.9e-25|56.7|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->107|1b9mA1|7e-22|17.8|107/122|a.4.5.8| RP:SCP:REP 93->289|1i69A|2e-27|25.5|192/206|c.94.1.1| HM:SCP:REP 4->115|1b9mA1|7.2e-29|48.6|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 90->294|1uthA_|2e-40|30.2|205/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 8919 OP:NHOMOORG 725 OP:PATTERN -------------------------------------1---------------1-------------- 4663H322776322E9711-14224M11111367878KUY-55B623212219872-6--2451A3UEHB6-222-2111276211112221-211---11611141213---------------1---1----1-45534---31733644534441111113539866211111111111133111---63GBBBBBDCC5BBBDEBB5DBEHCBD243B431655554QZ1--111111111-1122335133444412228911542432141-1--------11---------------------------111-----459A666667636325554222A41-27462199552212631121--1322D553-----B7UQX67CDIBFABBBBBAC8ABL-CHGDCYDRFc3-tWWLLSMghUOQdU763FKUEBFIANLCBCCCCCCEHIA8777------------------------------3CL43N*ue*******ZUWVQ****cbbcMc*s*r**w14ieRDINKJ*IlD*TDK97556MC22444255447DE6231424122A334-5146353429A59GC131-1--1111-----------13-22B9LIG999E6BC9FCDEB697HDEEDG8CFBJ2-1455A------MEKPAPJKLLIKHGGKJ-LJJKMIHKIJLHMHHJIHEaiZPO88BKFKHLKMLLKKHKHHJfFHEDEEH5-F898A9799BA9--1511111444448GNS444338244445444OQPMREI598Z9qnlpexlvSnrpnEWYb32211222269CANCCCCCBDEBBIMHJMJIAA932221-4222------------1-------------------------------------371 -------------1------------------------------------------------------------------------------------------------------------------------------------------------8----2---------2-1--------11--B-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 289 STR:RPRED 98.0 SQ:SECSTR EHEEcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTccHTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcGGGcccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTccTTcEEEEEEcGGGcEEEcccEEEEEGGGccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHH###### DISOP:02AL 1-1,87-90| PSIPRED cccccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccEEEEEEEEccEEEEEccccccccccccHHHHccccEEEcccccHHHHHHHHHHHccccccEEEEEccHHHHHHHHHccccEEEcHHHHHHHHcccccEEEEEcccccEEEEEEEEcccccccHHHHHHHHHHHHHHcc //