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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : pcaC.1
DDBJ      :pcaC         putative carboxymuconolactone decarboxylase
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  173/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.152.1
:177 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   48->165 2af7F PDBj 9e-08 32.5 %
:RPS:PDB   48->165 2af7A PDBj 2e-17 36.8 %
:RPS:SCOP  48->165 2af7A1  a.152.1.2 * 1e-25 33.9 %
:HMM:SCOP  47->165 2af7A1 a.152.1.2 * 8e-28 42.0 %
:RPS:PFM   96->155 PF02627 * CMD 2e-04 41.7 %
:HMM:PFM   78->159 PF02627 * CMD 1.5e-20 37.0 81/85  
:HMM:PFM   6->64 PF08289 * Flu_M1_C 0.00032 30.5 59/95  
:BLT:SWISS 47->165 DC4C_ACIAD 2e-15 35.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86665.2 GT:GENE pcaC.1 GT:PRODUCT putative carboxymuconolactone decarboxylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 857425..857958 GB:FROM 857425 GB:TO 857958 GB:DIRECTION + GB:GENE pcaC GB:PRODUCT putative carboxymuconolactone decarboxylase GB:PROTEIN_ID AAK86665.2 GB:DB_XREF GI:159139812 GB:GENE:GENE pcaC LENGTH 177 SQ:AASEQ MMSMSMKSSSAPPLPEEIDMKAIFPTAFAIAMFAGSALALANAQHLDDRLKRGDDVVRSLNNGQPQANLERMRQEFPFLAQATEGYALGEVWSRPGLDNRTRQLAAVAVMAALGERDLMKVHAGYALNVGATDEELKEMIYLITVPAGFPKAIAASRTLAELFEERRANAATGVERK GT:EXON 1|1-177:0| BL:SWS:NREP 1 BL:SWS:REP 47->165|DC4C_ACIAD|2e-15|35.3|119/134| SEG 1->10|mmsmsmksss| BL:PDB:NREP 1 BL:PDB:REP 48->165|2af7F|9e-08|32.5|114/116| RP:PDB:NREP 1 RP:PDB:REP 48->165|2af7A|2e-17|36.8|114/114| RP:PFM:NREP 1 RP:PFM:REP 96->155|PF02627|2e-04|41.7|60/83|CMD| HM:PFM:NREP 2 HM:PFM:REP 78->159|PF02627|1.5e-20|37.0|81/85|CMD| HM:PFM:REP 6->64|PF08289|0.00032|30.5|59/95|Flu_M1_C| RP:SCP:NREP 1 RP:SCP:REP 48->165|2af7A1|1e-25|33.9|118/119|a.152.1.2| HM:SCP:REP 47->165|2af7A1|8e-28|42.0|119/0|a.152.1.2|1/1|AhpD-like| OP:NHOMO 241 OP:NHOMOORG 182 OP:PATTERN -------1---------1-------------------------11----------------------- --1--------------11-11---211111-2122-------1-1-------1---1------1--21-------------1----------1-----------------------------------------------------------------------------------------11211------------------------------------1------2-----------------------------------------------------------------------------------------------1-------------------------------------------------11--------222------1-111111111-1---------11--122-222231231111--13------1--------1---11----------------------------------1---431-2111121122222312222131121211--2211----121112--------------------11-------------1-----------------1----------------------------11---1-----1111-1-121--1----1-------------11----1-----------------------------2222---------------------1----------11111111111-----------------1---1-----------1111111---2-11-11---111123----------------1------1---1-1---------------------------------------------------------------------- -------------1--------1------------------------------1------------------------------------------------1------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 120 STR:RPRED 67.8 SQ:SECSTR ##############################################ccHHHHHHHHHHHccHHHHHHHHTcHHHHcHHHHHHHHHTccccccTcccccHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHTccc########### DISOP:02AL 1-9,39-49,166-178| PSIPRED cccEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccc //