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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : pcrA
DDBJ      :pcrA         DNA helicase II
Swiss-Prot:             

Homologs  Archaea  20/68 : Bacteria  905/915 : Eukaryota  95/199 : Viruses  0/175   --->[See Alignment]
b.35.1c.37.1
:824 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   53->693 3pjrA PDBj e-128 43.6 %
:RPS:PDB   53->572 3e1sA PDBj 7e-60 11.0 %
:RPS:PDB   601->689 3e1sA PDBj 3e-10 18.7 %
:RPS:SCOP  56->691 1qhh.1  c.37.1.19 * 2e-88 42.1 %
:RPS:SCOP  747->792 1vj1A1  b.35.1.2 * 1e-04 17.4 %
:HMM:SCOP  46->697 1qhh.1 c.37.1.19 * 3.1e-173 37.8 %
:RPS:PFM   13->85 PF02569 * Pantoate_ligase 3e-04 34.2 %
:RPS:PFM   60->474 PF00580 * UvrD-helicase 2e-88 48.2 %
:HMM:PFM   56->545 PF00580 * UvrD-helicase 3.1e-133 37.4 486/533  
:HMM:PFM   583->659 PF01443 * Viral_helicase1 0.00047 26.2 65/226  
:BLT:SWISS 48->684 UVRD_RICBR e-147 48.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87809.2 GT:GENE pcrA GT:PRODUCT DNA helicase II GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2019745..2022219 GB:FROM 2019745 GB:TO 2022219 GB:DIRECTION + GB:GENE pcrA GB:PRODUCT DNA helicase II GB:PROTEIN_ID AAK87809.2 GB:DB_XREF GI:159140303 GB:GENE:GENE pcrA LENGTH 824 SQ:AASEQ MSNSFDDMPFFDEEPVAPRRATNNAPSENGGGLGIAARAMAARDQVRPAHDYLSGLNPEQREAVETLDGPVLVLAGAGTGKTRVLTTRIAHILATGRAYPSQILAVTFTNKAAREMKERIGVLVGGAVEGMPWLGTFHSIGVKLLRRHAELIGLKSDFTILDTDDVVRLIKQLIQAEGLDDKRWPAKQFAGMIDGWKNKGLTPPDIPEGDSRAFANGKGRELYAAYQARLKTLNACDFGDLLLHPISIFRRHTDILKEYHQKFRYILVDEYQDTNTAQYMWLRLLAQRAKDEPQNVCCVGDDDQSIYGWRGAEVDNILRFDKDFPGAKVIKLERNYRSTEHILGAAGHLIAHNEGRLGKTLFTERSSPDDEKVVVHAAWDSEEEARAVGEEIEQLQRKNYKLNDMAILVRASFQMREFEDRFVTLGLNYRVIGGPRFYERLEIRDAMAYFRLVCQPADDLAFERIVNTPKRGLGDTTIRNLHDYARARDIPMLAAAADIIETDELKPKARKALFDVVQDFRRWQGLLENTEHTTLAEQILDESGYTAMWQADKTAEAPGRLENLKELIRSMESFESMRGFLEHVALVMDAEQNAELDAVSIMTLHSAKGLEFDTVFLPGWEEGLFPHQRALDEGGRSGLEEERRLAYVGITRAKKLCHIWFVSNRRIHGLWQSTLPSRFLDELPPAHVDVAASDSNYGGYGGRGGYGQSRFDKADPFTNNYSTPGWKRAQQNRSDATRDNWGTRSGHAVERIGYGESGPRTRTIDGELVAKSVADKPSKFFVGDRVFHLKFGNGNISAIEGNKLTINFDRAGEKRVLDGFVEKV GT:EXON 1|1-824:0| BL:SWS:NREP 1 BL:SWS:REP 48->684|UVRD_RICBR|e-147|48.4|628/653| SEG 382->393|eeearavgeeie| SEG 631->645|ldeggrsgleeerrl| SEG 697->707|yggyggrggyg| BL:PDB:NREP 1 BL:PDB:REP 53->693|3pjrA|e-128|43.6|629/646| RP:PDB:NREP 2 RP:PDB:REP 53->572|3e1sA|7e-60|11.0|493/517| RP:PDB:REP 601->689|3e1sA|3e-10|18.7|75/517| RP:PFM:NREP 2 RP:PFM:REP 13->85|PF02569|3e-04|34.2|73/279|Pantoate_ligase| RP:PFM:REP 60->474|PF00580|2e-88|48.2|407/449|UvrD-helicase| HM:PFM:NREP 2 HM:PFM:REP 56->545|PF00580|3.1e-133|37.4|486/533|UvrD-helicase| HM:PFM:REP 583->659|PF01443|0.00047|26.2|65/226|Viral_helicase1| GO:PFM:NREP 6 GO:PFM GO:0004592|"GO:pantoate-beta-alanine ligase activity"|PF02569|IPR003721| GO:PFM GO:0015940|"GO:pantothenate biosynthetic process"|PF02569|IPR003721| GO:PFM GO:0003677|"GO:DNA binding"|PF00580|IPR000212| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF00580|IPR000212| GO:PFM GO:0005524|"GO:ATP binding"|PF00580|IPR000212| GO:PFM GO:0006281|"GO:DNA repair"|PF00580|IPR000212| RP:SCP:NREP 2 RP:SCP:REP 56->691|1qhh.1|2e-88|42.1|610/623|c.37.1.19| RP:SCP:REP 747->792|1vj1A1|1e-04|17.4|46/166|b.35.1.2| HM:SCP:REP 46->697|1qhh.1|3.1e-173|37.8|624/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 2120 OP:NHOMOORG 1020 OP:PATTERN --------------------------1-2312512--1--211-2122-11-2-------------2- 1131333333333333333-33223233333333333333245533223332343333334545434443532224332232111211122111111--11211132241222222221111112-1111111122233331112111131111122111111211111211111111111112111122145222222222222223233223222212222332221112212222222222222221121111122121121111221221112222222111222222322232222222222222222211111111212243444334434324223444233326321211212215222221121223111111111223223112222211111111111-22115121231122212322322212231111221331122222222321312111111111121111111111111111111111112233233322222222222243222223234334511643223223433443243222222222222232232224322222622222222432333333333312222222222222222222222222322242432232323333223322232322421-2223311111133232333333333453-33333333333333333333232333243333333333433333333333331333333333333--2222222222232433422222222222222322232223222343343333333234343222233223344433333343432222322222222211224433442221211122211111-11111111112112211112222111111112 --11--2-211----111111111-11-------------------11-111111111-1--111121-11111111-1121111111-11111111111111211-153---------------------------------3--------------2----1---------11223181-11-1113113-2----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 684 STR:RPRED 83.0 SQ:SECSTR #######ccccHHHHHHHHHHHccccEEEEccccHHHHHHTTccEEEEcHHHHHTTcccHHHHHHHHHcHHHHHHHHHTccccEEHHHHHHHHHHHHcccHHHHHHHHHHHHHHTccEEEcccccccccccHcEEEcHHHHHHHHHHHHHHHHHHHccccccccccccccTTTTTTccHHHHHHHHHHTTccEEEEEccTTccHHHHHHHHHHHHHHTTccEccHHHHHHHHHHHTccEEEHHHHTTEETTEEcccccccccccEEEEccGGGccHHHHHHHHTTccTTcHHHHEEEEEEcTTcccccccccHHHHHHHHccEEEcccccHHHHTcHHHHHHHHHHTTcccccccTTEEEEEcccHTTTcHHHHHHHHHHTTcGGGcEEEEcccccTcHHHHHHHHHHHHccccccEEccccEEcTTcEEEEccccTTTTccTTcEEEEEEEccccEEEEETTEEEEEcGGGGTTEEEccEEEHHHHTTccEEEEEEEEcGGGEEEccTTccHHHHHHGGGccHHHHHHHHHHHTEEEEEEEEEcHHHHHHcccccccccHccHHHHHHHHTTccTTcEEEEcTTccEEEEcccEccccGGGcccccccccccccEEETcccEEEEEcHT##cccHHHHHHHHHHHHTTccEEEEEEEETTEEEEEEEcTTTcTTcccccEEEEEEEcccccc################################################################################################################################### DISOP:02AL 1-2,16-50,698-698,701-704,726-779| PSIPRED cccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHccccHHEEEEEEccHHHHHHHHHHHHHHccHHHHcccEEEcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHccccEEEEccHHHccHHHHHHHHHHHHHccccccEEEEEEccccccHHHccccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHccccHHHEEEEEccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEHHHHccccccEEEEEcccccccccHHHcccccHHHHHHHHHHHHHHHccHHcEEEEEEEcccccccccccccccHHHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEEEccEEEEEcccccHHHHHHHHHHcc //