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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : pepN
DDBJ      :pepN         aminopeptidase N
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  571/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
b.98.1d.92.1
:882 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->880 2hpoA PDBj 0.0 45.3 %
:RPS:PDB   7->880 2dqmA PDBj e-152 44.0 %
:RPS:SCOP  7->199 1gw6A2  b.98.1.1 * 2e-29 19.7 %
:RPS:SCOP  211->457 1gw6A3  d.92.1.13 * 3e-60 21.4 %
:HMM:SCOP  2->200 1hs6A2 b.98.1.1 * 3.8e-43 33.0 %
:HMM:SCOP  209->457 1hs6A3 d.92.1.13 * 9.2e-76 37.2 %
:RPS:PFM   55->391 PF01433 * Peptidase_M1 1e-53 41.5 %
:RPS:PFM   468->880 PF11940 * DUF3458 2e-83 43.4 %
:HMM:PFM   466->881 PF11940 * DUF3458 2.4e-139 46.3 406/410  
:HMM:PFM   16->391 PF01433 * Peptidase_M1 4.9e-64 27.0 370/391  
:HMM:PFM   423->478 PF11838 * DUF3358 6.5e-06 30.4 56/428  
:BLT:SWISS 1->880 AMPN_CAUCR 0.0 46.9 %
:PROS 301->310|PS00142|ZINC_PROTEASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86793.1 GT:GENE pepN GT:PRODUCT aminopeptidase N GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(977570..980218) GB:FROM 977570 GB:TO 980218 GB:DIRECTION - GB:GENE pepN GB:PRODUCT aminopeptidase N GB:PROTEIN_ID AAK86793.1 GB:DB_XREF GI:15155997 GB:GENE:GENE pepN LENGTH 882 SQ:AASEQ MRTDTGQIVHLADYRPTDFVLERVDLTFELDPKNTKVEARLIFHRREGAERDAPLVLDGDELTLSSLLLDQVELPAGRYEATPDSLTIRDLPAESPFEICVTNYINPQVNTQLMGLYRTNGVYCTQCEAEGFRRITYFPDRPDVLAPYTVTIIAAKEGNPLLLSNGNFLGGGNYDEGRHFAAWFDPHPKPSYLFALVAGDLGVVEDTFTTMSGRDVALKIYVEHGKEPRAAYAMDALKRSMKWDEERFGREYDLDIFMIVAVSDFNMGAMENKGLNVFNDKFVLADPETASDADYANIERIIAHEYFHNWTGNRITCRDWFQLCLKEGLTVYRDQEFSADMRSRPVKRIADVRHLKSEQFPEDSGPLAHPPRPDTYREINNFYTTTVYEKGAEVTRMIATILGADDFKKGMDLYFERHDGEAATVEDFVKSFADASGRDLSQFSLWYTEAGTPLVSVSCAYDAGNAAFKLTLEQTVAPTPGQPVKQPRHIPLSLALILDNGQIAEPQAVEGGEYRDGVLHLTERNQTFSFSGISSRPVLSINRSFSAPINLDFEQNADDLVQIARHETDMFARFQALTDLALPALIAATRAVQNGEEIRTDAALSATLIEIIGNDALEPAFRAQALALPSETDIARELGGNTDPDAIHKARNATIAAIATAGVETLRRLADGVANGEAYSPDADSAGRRSLRNGALSFLAFAEGTPERAAKAYADATNMTDLAHALSVLTQRFPDSAETKEALAAFETRFADNALVLDKWFSLQAAIPGDGALDRIKTLMKSKHFIATNPNRVRSLVGTLAFANPTGFHRADGAAYRFLAEQIIAIDKRNPQLAARILTSMRSWRSLEASRAEHAKAALSTIAEAKGLSTDVSDIVGRILKG GT:EXON 1|1-882:0| BL:SWS:NREP 1 BL:SWS:REP 1->880|AMPN_CAUCR|0.0|46.9|857/863| PROS 301->310|PS00142|ZINC_PROTEASE|PDOC00129| SEG 158->173|gnplllsngnflgggn| SEG 653->661|atiaaiata| BL:PDB:NREP 1 BL:PDB:REP 13->880|2hpoA|0.0|45.3|856/866| RP:PDB:NREP 1 RP:PDB:REP 7->880|2dqmA|e-152|44.0|862/867| RP:PFM:NREP 2 RP:PFM:REP 55->391|PF01433|1e-53|41.5|330/379|Peptidase_M1| RP:PFM:REP 468->880|PF11940|2e-83|43.4|408/415|DUF3458| HM:PFM:NREP 3 HM:PFM:REP 466->881|PF11940|2.4e-139|46.3|406/410|DUF3458| HM:PFM:REP 16->391|PF01433|4.9e-64|27.0|370/391|Peptidase_M1| HM:PFM:REP 423->478|PF11838|6.5e-06|30.4|56/428|DUF3358| GO:PFM:NREP 2 GO:PFM GO:0008237|"GO:metallopeptidase activity"|PF01433|IPR014782| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01433|IPR014782| RP:SCP:NREP 2 RP:SCP:REP 7->199|1gw6A2|2e-29|19.7|193/208|b.98.1.1| RP:SCP:REP 211->457|1gw6A3|3e-60|21.4|238/252|d.92.1.13| HM:SCP:REP 2->200|1hs6A2|3.8e-43|33.0|191/208|b.98.1.1|1/1|Leukotriene A4 hydrolase N-terminal domain| HM:SCP:REP 209->457|1hs6A3|9.2e-76|37.2|239/252|d.92.1.13|1/1|Metalloproteases ("zincins"), catalytic domain| OP:NHOMO 1897 OP:NHOMOORG 794 OP:PATTERN ------21222222221211111----------------------11--1111--------222--11 1111421111111111111-11111111111112221122-2221113211122222211133211163311111111----------11-1-1--1--112--131122------------------1-1----1----------111-111--111111111112111111-1111111-1-----------------------------------------------------------------------111111111111111111111111111111111111111111111111111111111111--111---1--1----------------------------------------111-------31111111111-----------11111111111-11111111111-1111111111111112-1111111111--------11111-1-------------------------------122121111122222221111222111111122111111122211111111111111111-1111111111111111-1-1----------111--1-1-121152-1--------------------1----11111212123213222223233321323222--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--141111122221111111111111111111122222211111111111111111111111111111-111-1111111111111113333333311111-1-221111------------------------------------------------- 1111562-533-55243213233333333322222223232333333334224223343222443233223253442-2221112111-241314121114113433424IDDBECF6856683986B3L*C1B8J6646A489987644C35F596688LR8H9LAQDPb9DDI2213H32122447A23A2468782 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 880 STR:RPRED 99.8 SQ:SECSTR cccTTcccEEGGGcccccEEEEEEEEEEEcccccEEEEEEEEEEEccTccTTccEEEEccccEEEEEEETTEEcccTTEEEETTEEEEcccccEEEEEEEEEEEEcGGGcTTccEEEEETTEEEEEcTTTTGGGTccccccTTcccEEEEEEEEETTTccEEEEccEEEEEEEccTTEEEEEEEccccccGGGccEEEEccEEEEEEEEcTTccEEEEEEEEcTTcGGGcHHHHHHHHHHHHHHHHHHcccccccEEEEEEEccccccEEccTTEEEEEGGGTcccTTTccHHHHHHHHHHHHHHHHTTTcTTTEEEccGGGHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHTHHHHHTcTTcccccccEEccGGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEcHHHHHHHHHHHHTcccTTTTHHHHcccccEEEEEEEEETTTTEEEEEEEEEccccTTccccccccEEEEEEEEcTTccccccccEETTEEcccEEEEcccEEEEEEcccccccEEEEcGGGccccEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHTTTccccccHHHHHHHHHHHHcTTccHHHHHHHTccccHHHHHHTTcccccHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTcccccccccHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHHTTcHHHHHHHHHHHHTcccTTHHHHHHHGGGcTTccTTcHHHHHHHHHHHHHHcHHHHTcTTcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHTcTTccHHHHHHHHHHH## DISOP:02AL 1-5| PSIPRED cccccccEEcccccccccEEEEEEEEEEEEEcccEEEEEEEEEEEEEccccccEEEEEccccEEEEEEEccEEEccEEEEccccEEEEccccccccEEEEEEEEEEEcccccccccEEEccEEEEEcccccccEEEEEcccccccccEEEEEEEcccccEEEEEcccccccEEEcccEEEEEEEEcccccHHHEEEEEccEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccHHcccHHEEEcHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEEEEccccEEEEEEEEEEccccccccccEEEEEEEEEEEccccccccccEEccccccccEEEEcccccEEEEcccccccEEEEEcccEEEEEEEccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcc //