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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : prfB
DDBJ      :prfB         peptide chain release factor 2
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  188/199 : Viruses  0/175   --->[See Alignment]
e.38.1
:342 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->326 1gqeA PDBj 5e-84 51.4 %
:RPS:PDB   1->329 2b3tB PDBj 3e-95 38.3 %
:RPS:SCOP  1->330 1gqeA  e.38.1.1 * e-113 47.7 %
:HMM:SCOP  1->330 1gqeA_ e.38.1.1 * 1.9e-105 45.0 %
:RPS:PFM   54->159 PF03462 * PCRF 4e-16 44.3 %
:RPS:PFM   194->278 PF00472 * RF-1 4e-20 61.2 %
:HMM:PFM   190->302 PF00472 * RF-1 4.6e-44 49.1 112/114  
:HMM:PFM   52->159 PF03462 * PCRF 2.8e-35 44.4 108/116  
:BLT:SWISS 1->335 RF2_MAGSA e-134 67.5 %
:PROS 209->225|PS00745|RF_PROK_I
:COIL

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87134.1 GT:GENE prfB GT:PRODUCT peptide chain release factor 2 GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1331605..1332633 GB:FROM 1331605 GB:TO 1332633 GB:DIRECTION + GB:GENE prfB GB:PRODUCT peptide chain release factor 2 GB:PROTEIN_ID AAK87134.1 GB:DB_XREF GI:15156400 GB:GENE:GENE prfB LENGTH 342 SQ:AASEQ MNNKAEDPTLWNDASEAQKLMRERQQLDDSINGVKALEQQLKDNIELIELGEMEGDDEIVKDAEDALKALRSEANRRQVEAMLSGEADSNDTYVEVHSGAGGTESQDWANMLLRMYTRWAERQGFKVEVLEIHDGDEAGIKSATILVKGHNAFGWMKTESGVHRLVRISPYDSNARRHTSFSSIWVYPVVDDSIQIDINESDCRIDTYRSSGAGGQHVNTTDSAVRITHIPTGIAVACQQERSQHKNRAKAWDMLRARLYEVELQKREEAANAQAASKTDIGWGHQIRSYVLQPYQLVKDLRTGVESTAPGNVLDGDLNEFMEAALAHRISGGADVEVSDID GT:EXON 1|1-342:0| BL:SWS:NREP 1 BL:SWS:REP 1->335|RF2_MAGSA|e-134|67.5|335/371| PROS 209->225|PS00745|RF_PROK_I|PDOC00607| COIL:NAA 39 COIL:NSEG 1 COIL:REGION 16->54| BL:PDB:NREP 1 BL:PDB:REP 1->326|1gqeA|5e-84|51.4|317/354| RP:PDB:NREP 1 RP:PDB:REP 1->329|2b3tB|3e-95|38.3|282/300| RP:PFM:NREP 2 RP:PFM:REP 54->159|PF03462|4e-16|44.3|106/115|PCRF| RP:PFM:REP 194->278|PF00472|4e-20|61.2|85/107|RF-1| HM:PFM:NREP 2 HM:PFM:REP 190->302|PF00472|4.6e-44|49.1|112/114|RF-1| HM:PFM:REP 52->159|PF03462|2.8e-35|44.4|108/116|PCRF| GO:PFM:NREP 5 GO:PFM GO:0005737|"GO:cytoplasm"|PF03462|IPR005139| GO:PFM GO:0006415|"GO:translational termination"|PF03462|IPR005139| GO:PFM GO:0016149|"GO:translation release factor activity, codon specific"|PF03462|IPR005139| GO:PFM GO:0003747|"GO:translation release factor activity"|PF00472|IPR000352| GO:PFM GO:0006415|"GO:translational termination"|PF00472|IPR000352| RP:SCP:NREP 1 RP:SCP:REP 1->330|1gqeA|e-113|47.7|329/362|e.38.1.1| HM:SCP:REP 1->330|1gqeA_|1.9e-105|45.0|329/362|e.38.1.1|1/1|Release factor| OP:NHOMO 2215 OP:NHOMOORG 1099 OP:PATTERN -------------------------------------------------------------------- 2222222222222222222-2222222222222222222222222222222222222222222222222222222222222222222233322212222223222322221222222222112231122222222222222222322222222112222222222232222222222222222221222222221222222222222222222222222222222222222222222222221222222222212222222222222222222222222122222222222222222222222222222222222222222222223222222222222222222222222222222222222222222222222222222222222222222222222222222212212222222222222222222232222222222222222222222222222122222223322222212222222222222212222222222222222222212222222222222232222222222322222321122222222122222222222222222222222222222233334432322223222222222222222222222222222221222223222222222222222222122223122222212222222222122333323323-22233333332332323332223322332332232222333331323231222222222212222222212122222222211222222221222222222222222222232333212122221222222222222122212222222221222222222222222222222222222222212222221-111-1111111111111112222222232222 33--221-511-11112111111111111111111111-1111112111111111121111111111112112111111111111111-21121111111111111-1622322233-22124221231BJ2-32421212-222221122123222232111111-122311215254M33323456819B3342223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 341 STR:RPRED 99.7 SQ:SECSTR HHHHHHHHTTccccccHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTcTTcHHHHHHHHHHHHHHHHHHHHcccccccccccccGGGccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHTTccccEEEEEEcTTccEEEEEEEEcccccHHHHGGGcEEEEEEEccTTccccccEEEEEEEEccccccTTTccccccccEEEEEcccccccTTTcccccEEEEEEETTTccEEEEEEcccHHHHHHHHHHHHHHHHTTTTTTccHHHHHHHHHHHcccccccEEEEEETGTTTEEEEGGGTEEEccHHHHHHTcTHHHHHHHHHHHHHHHHHHHHHTT# DISOP:02AL 1-3, 264-287, 329-342| PSIPRED cccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEEEcHHHHHHHHccccEEEEEEEccccccccEEEEEEEEEEEcccccccccccccccEEEEEEEccccccccccEEccEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccEEEEEEEccEEcccHHHHcccHHHHHHHHHHHHHHHHHHHHHHccc //