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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : prfC
DDBJ      :prfC         peptide chain release factor 3
Swiss-Prot:             

Homologs  Archaea  58/68 : Bacteria  912/915 : Eukaryota  191/199 : Viruses  0/175   --->[See Alignment]
b.43.3c.37.1d.58.11
:527 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->521 2h5eA PDBj e-118 48.7 %
:RPS:PDB   10->510 2dy1A PDBj 5e-54 21.8 %
:RPS:SCOP  1->269 1darA2  c.37.1.8 * 5e-51 31.6 %
:RPS:SCOP  249->378 1n0uA1  b.43.3.1 * 4e-14 18.5 %
:RPS:SCOP  387->456 1fnmA4  d.58.11.1 * 6e-12 22.9 %
:HMM:SCOP  7->270 2bv3A2 c.37.1.8 * 3.6e-82 41.2 %
:HMM:SCOP  253->385 2bv3A1 b.43.3.1 * 9.4e-30 36.4 %
:HMM:SCOP  384->457 2bv3A4 d.58.11.1 * 1.9e-14 35.1 %
:RPS:PFM   13->161 PF00009 * GTP_EFTU 1e-21 38.2 %
:HMM:PFM   11->269 PF00009 * GTP_EFTU 6.4e-52 39.0 177/189  
:HMM:PFM   306->372 PF03144 * GTP_EFTU_D2 6.4e-10 29.9 67/74  
:BLT:SWISS 6->522 RF3_PSEFS e-145 50.3 %
:PROS 57->72|PS00301|EFACTOR_GTP
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86131.1 GT:GENE prfC GT:PRODUCT peptide chain release factor 3 GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 307457..309040 GB:FROM 307457 GB:TO 309040 GB:DIRECTION + GB:GENE prfC GB:PRODUCT peptide chain release factor 3 GB:PROTEIN_ID AAK86131.1 GB:DB_XREF GI:15155218 GB:GENE:GENE prfC LENGTH 527 SQ:AASEQ MAETLAEAVSRRRTFAIIAHPDAGKTTLTEKLLLFGGAIQLAGEVKAKKDRIQTRSDWMKIERERGISVVTSVMTFEYNDRVFNILDTPGHEDFADDTYRTLTAVDAAIMVIDAAKGIEPRTLKLFEVCRMRDIPIITFINKMDRESRDPFEILDEVEEKLALDTAPITWPVGRAKSFCGAYNLAENTFRGNDTQVDGLSVNGPQAVADRLPENERKVFVEETELALEACRPFDRQAFLEGHMTPVFFGSALRNFGVRDLINALGDFAPPPRDQVADTRVVHAAEDKMTAFVFKIQANMDPNHRDRIAFARICSGKLERGMKARLSRTGKLMGLTAPQFFFASQRQLADTAFAGDVVGIPNHGTLRIGDTLTEGENLVFQGVPNFSPEILRRVRLEDAMKAKKLKEALQQMAEEGVVQLFSPEDGSPAIVGVVGALQLDVLKERLMGEYGLPVSFEMSRFSVCRWISSDQPAEMDKFLNVKRGDIARDLDGDPVFLAQDAFSLRYESERFPAIKMVAIKEYHVAKAA GT:EXON 1|1-527:0| BL:SWS:NREP 1 BL:SWS:REP 6->522|RF3_PSEFS|e-145|50.3|515/527| PROS 57->72|PS00301|EFACTOR_GTP|PDOC00273| SEG 104->115|avdaaimvidaa| BL:PDB:NREP 1 BL:PDB:REP 7->521|2h5eA|e-118|48.7|470/488| RP:PDB:NREP 1 RP:PDB:REP 10->510|2dy1A|5e-54|21.8|473/660| RP:PFM:NREP 1 RP:PFM:REP 13->161|PF00009|1e-21|38.2|144/183|GTP_EFTU| HM:PFM:NREP 2 HM:PFM:REP 11->269|PF00009|6.4e-52|39.0|177/189|GTP_EFTU| HM:PFM:REP 306->372|PF03144|6.4e-10|29.9|67/74|GTP_EFTU_D2| GO:PFM:NREP 2 GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| RP:SCP:NREP 3 RP:SCP:REP 1->269|1darA2|5e-51|31.6|237/254|c.37.1.8| RP:SCP:REP 249->378|1n0uA1|4e-14|18.5|119/138|b.43.3.1| RP:SCP:REP 387->456|1fnmA4|6e-12|22.9|70/79|d.58.11.1| HM:SCP:REP 7->270|2bv3A2|3.6e-82|41.2|260/0|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 253->385|2bv3A1|9.4e-30|36.4|121/0|b.43.3.1|1/1|Translation proteins| HM:SCP:REP 384->457|2bv3A4|1.9e-14|35.1|74/0|d.58.11.1|1/1|EF-G C-terminal domain-like| OP:NHOMO 4646 OP:NHOMOORG 1161 OP:PATTERN 11-1111111111111-------11-111111112111111111111111111111111111111-11 3443644444344433333-3433333333334444445533334333444345433433335333465443555454444432333365552555312544444634542222222222222245445544454444433444435565665344444444466445556444444444444555223334334444444434444445333334443335444444444564544444444445434444445544445545665544454444434544444444444455545545434444444443446544474544556666666666666555666665654555536645343434444334453544445444444455554554454444444444414444454445435554454555444444444455654444444444444444454333333333322333333333333333333445445554544454444344445644444444566653455555444555555445454444444443444455556666666566666456656666677776666333333343333333333333333344444545545556555555655556455565214544444344444444544444444444-44444444444444444445554544444444444443444445444443342544444444444224444444444454645433444444434444444444444445555554444555544444444444444555655555565665543434444444444535556553223333343422223-22332222222322222223333333333253 56--433-D43-3432123433333333333333433444344333113433334434433344443323323343523533333444-32313432222222332-4A455743472233244A9281AL6-578221261353333-132372533736C25332335M33545686*76555A46C2777684446 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 521 STR:RPRED 98.9 SQ:SECSTR cccTccccGccEEEEEEEEcTTccHHHHHHHHHHHTTcccccccGGGTcHHHHccccccHHHHHTTcccccEEEEEEETTEEEEEEEccccGGGHHHHHHHHHHccEEEEEEETTTcccHHHHHHHHHHHHTTccEEEEEEcGGGcccHHHHHHHHHHHHHcccEEEcEEEEEETTEEEEEEETTTcccccccETEEEEEETTEEEEEcccGGGHHHHHHHTccccHHHHHHHHHHHHHTTccEEEEEccTTTTccHHHHHHHHHHHcccHHHccTTccEEHHcccccEEEEEEEEEETccTTTEEEEEEEEEEcEEcTTEEEccTTccEEEEEccEEEEETTEEEEEccEETTcEEEEcccTTccTTcEEEccccccGGGcccccccEEEEEEEccHHHHHHHHHHHHHHHHHcTTcEEEEcTTTcEEEEEccHHHHHHHGHHHHHHTTccEEEEccccccEEEEcccEEEEEEETTEEEEEEEEEEEEEccccEEEEcccTTcccGGGccccGGGHHHH###### DISOP:02AL 1-8, 400-401, 524-527| PSIPRED ccHHHHccccccEEEEEEccccccHHHHHHHHHHHHcHHHHccccccccccccEEEccHHHHHHHccEEEEEEEEEEEccEEEEEEEccccccHHHHHHHHHHHHcEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHccccEEEEEEEEEccccEEEEEEEccEEEEccccHHEEEEccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEEEEEEccccHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccccccEEEEEEEEEEEEccccEEEEEccccEEEEEEEEEEccccEEEEcEEccccEEEEEccccEEEccEEccccccccccccccccEEEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEEEEcHHHHHHHHHHHHHHccccEEEcccEEEEEEEEEcccHHHHHHHHcccccEEEEEccccEEEEEccHHHHHHHHHHcccEEEEHHHHHHHHHcc //