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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : priA
DDBJ      :priA         primosomal protein N'
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  840/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.37.1c.52.3
:738 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   34->116 2d7hD PDBj 3e-04 27.7 %
:BLT:PDB   210->368 2eyqB PDBj 2e-11 31.5 %
:RPS:PDB   34->116 2d7hD PDBj 2e-21 27.7 %
:RPS:PDB   209->644 1br2A PDBj 6e-53 10.6 %
:RPS:SCOP  136->174 1hcrA  a.4.1.2 * 3e-04 23.7 %
:RPS:SCOP  210->372 2eyqA3  c.37.1.19 * 3e-36 29.4 %
:RPS:SCOP  427->553 1dzfA1  c.52.3.1 * 2e-31 12.9 %
:HMM:SCOP  151->372 1z3iX2 c.37.1.19 * 1.6e-38 25.4 %
:HMM:SCOP  467->658 1gkuB2 c.37.1.16 * 3.8e-21 23.9 %
:RPS:PFM   205->368 PF04851 * ResIII 4e-07 30.9 %
:HMM:PFM   210->369 PF00270 * DEAD 4.2e-14 25.0 144/167  
:HMM:PFM   517->600 PF00271 * Helicase_C 1e-06 28.2 71/78  
:HMM:PFM   455->500 PF07191 * DUF1407 4e-06 31.8 44/70  
:BLT:SWISS 34->738 PRIA_RHORU e-143 43.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88348.2 GT:GENE priA GT:PRODUCT primosomal protein N' GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2609929..2612145) GB:FROM 2609929 GB:TO 2612145 GB:DIRECTION - GB:GENE priA GB:PRODUCT primosomal protein N' GB:PROTEIN_ID AAK88348.2 GB:DB_XREF GI:159140558 GB:GENE:GENE priA LENGTH 738 SQ:AASEQ MAKDSSDLFGALFDPPSPTRTVPVLVPLPAPGPYSYAVPEDMVVETGSVVQVPLGPRQVFGVVWDDAGEKGVDPKKLRPITKSFECPPLKVEMRRFVDWVAAYTLSPPGLVARMALRAPAAFDPEPMIEGLRLTEGRPERLTPARERVMELAAEGQGWTKSGLAHAAGVSTSVIDGLVKQGVFETVFLPAPPVVAEPDPDYVEPRLEGPQKQAASEIIEDVRKGGFHVSLIDGVTGSGKTEVYFEAVAETLRQGKQVLILLPEIALTAAFLERFQDRFGAKPAEWHSDLSPRMREKVWRQAVTGEIKVVAGARSALFLPFDNLGLIIVDEEHDPAYKQEDRVFYNARDMAVVRARIAEFPVVLVSATPSVESQVNGSSGRYNTIHLHTRFGDAAMPDLHLVDMRRHPPERGGFLSPVLLRGIGKTIEKGEQSLLFLNRRGYAPLTLCRVCGHRFQCPQCSSWLVEHRFRNQLQCHQCGHNEPTPDHCPECGTFDHLVACGPGVERIAEEVEKHFPEARTIVLSSDLMGVKRLRLELEAIVKGEADIVIGTQLVAKGHNFPLMTLVGIVDADLGLANGDPRAAERTFQLLSQVTGRAGRTGLKSHGLLQTYQPQHPVMQAIVSGDASAFYEREIVEREKAVLPPFGRLASIIVSADTRAEAETHARGLRAAAPQVTGIMLLGPAEAPLALIRGRHRFRLLVHGRRNSDMQSFLRTLLASGPKERGSVHVQLDIDPQSFL GT:EXON 1|1-738:0| BL:SWS:NREP 1 BL:SWS:REP 34->738|PRIA_RHORU|e-143|43.6|702/811| SEG 15->33|ppsptrtvpvlvplpapgp| SEG 189->204|pappvvaepdpdyvep| BL:PDB:NREP 2 BL:PDB:REP 34->116|2d7hD|3e-04|27.7|83/102| BL:PDB:REP 210->368|2eyqB|2e-11|31.5|149/1143| RP:PDB:NREP 2 RP:PDB:REP 34->116|2d7hD|2e-21|27.7|83/102| RP:PDB:REP 209->644|1br2A|6e-53|10.6|435/673| RP:PFM:NREP 1 RP:PFM:REP 205->368|PF04851|4e-07|30.9|149/177|ResIII| HM:PFM:NREP 3 HM:PFM:REP 210->369|PF00270|4.2e-14|25.0|144/167|DEAD| HM:PFM:REP 517->600|PF00271|1e-06|28.2|71/78|Helicase_C| HM:PFM:REP 455->500|PF07191|4e-06|31.8|44/70|DUF1407| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF04851|IPR006935| GO:PFM GO:0005524|"GO:ATP binding"|PF04851|IPR006935| GO:PFM GO:0016787|"GO:hydrolase activity"|PF04851|IPR006935| RP:SCP:NREP 3 RP:SCP:REP 136->174|1hcrA|3e-04|23.7|38/52|a.4.1.2| RP:SCP:REP 210->372|2eyqA3|3e-36|29.4|153/233|c.37.1.19| RP:SCP:REP 427->553|1dzfA1|2e-31|12.9|124/139|c.52.3.1| HM:SCP:REP 151->372|1z3iX2|1.6e-38|25.4|213/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 467->658|1gkuB2|3.8e-21|23.9|180/248|c.37.1.16|2/2|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1162 OP:NHOMOORG 842 OP:PATTERN -------------------------------------------------------------------- 211--111111-1-1-111-11--111-11111111-1--------1-111--11--111---1------1-------1111-1-21-111111111--11111111211111111111111111111111111112221111111321111121221112111121222211111111111122-2211221111111111111111111111111111111111111111111111111111111111111221111111211111111111111111111111111111211111111111111111111122111222111121111111111111111111111111112211111212222211122111211111111212211221121111121111111-11111211211111111111111111112111111111111111111111211111121111111111111211111111111111111222222222222222222222222222222111121111121111121212221222221122122222222111111111111111111122211111111122122122122222222222222221222222222222122222222222222222221-122211--11122222212222222222-2222222222222222222222222222222222222222222222222122-222222222222--21333332222122121221121111-222222222222222222221221211112111121212212222222222222211111111111111111111111111111111111111111---------------------2212212122111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 690 STR:RPRED 93.5 SQ:SECSTR #################################ccccccTTccccTTcEEEEEEccEEEEEEcccccccccccTTccccccEEcccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHEETTTccccEEEEGGGcccccccccHHHHTTccccccHHHTTHHHHHHHHHHHHTcccccccccccccHH#############cccTHHHHHHHHHHHHHHHTccEEEEEEccTTccHHHHHHHHHHHHHHHHTTHHHHHHHHHEEcccccTTEEccEEEEEEcTTccEEEEEEEEEcccGGGGTcccTTccccHHHHHHHHHcTTcccTTTcTTcTTcccccccccHHHHHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHTccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHcccccccHHHHHHHHcccHHEcccEEEEEETTEEEEEEcTTHHHHHHccccHHHHHHHHTcccHHHHHHTcccHHHHHHHHHHHTcEEEEEEEEcccccccTTccHcHHHHHHHHHHTTHHHHHHHHHHcccEEHHcccEEEEcccccTTcccHHHHHHTccccHHHHHHHHHHTTccTTcGGGGTcccGGGcccccccccccEEEcTTccEEEcccccccGGGTc## DISOP:02AL 1-5| PSIPRED ccccHHHHHHHcccccccccEEEEEEccccccccccccccccccccccEEEEEccccEEEEEEEEEcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccHHHHHHHHccccccccHHHHHHHcccccccHHHcccHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHccHHccccccccHHHcccHHccccccccHHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHcccccEEEccHHHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHcccccEEEEcccccccccccEEEEEEEHHHHHHcccccHHHHHHHHHHHHccccEEEEEcccccHHEEEEccccccccccccccEEEEEccccccccccccccccccHHccccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHcccccEEEEcHHHHcccccccEEEEEEEcccHHHcccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccHHHHHHHHHccHHHHHHHHHHHHHHccccccEEEEEEEEccccHHHHHHHHHHHHHHcccccccEEEcccccHHHHHcccEEEEEEEEcccHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHc //