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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ptrB
DDBJ      :ptrB         protease II
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  399/915 : Eukaryota  109/199 : Viruses  0/175   --->[See Alignment]
b.69.7c.69.1
:699 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->693 2bklB PDBj 8e-61 28.4 %
:RPS:PDB   103->201 3aahA PDBj 5e-05 10.9 %
:RPS:PDB   463->695 1e5tA PDBj 5e-28 27.9 %
:RPS:SCOP  6->423 1e5tA1  b.69.7.1 * 9e-29 17.4 %
:RPS:SCOP  427->695 1e5tA2  c.69.1.4 * 2e-72 31.7 %
:HMM:SCOP  4->427 1qfmA1 b.69.7.1 * 2.3e-96 31.1 %
:HMM:SCOP  431->673 1n1mA2 c.69.1.24 * 5.7e-40 26.3 %
:RPS:PFM   14->414 PF02897 * Peptidase_S9_N 2e-77 45.6 %
:RPS:PFM   487->679 PF00326 * Peptidase_S9 3e-19 33.9 %
:HMM:PFM   11->419 PF02897 * Peptidase_S9_N 1.9e-88 32.7 394/415  
:HMM:PFM   479->696 PF00326 * Peptidase_S9 2.7e-71 45.0 211/213  
:BLT:SWISS 11->694 PTRB_ECOLI e-111 37.5 %
:PROS 524->554|PS00708|PRO_ENDOPEP_SER
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86702.1 GT:GENE ptrB GT:PRODUCT protease II GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(887372..889471) GB:FROM 887372 GB:TO 889471 GB:DIRECTION - GB:GENE ptrB GB:PRODUCT protease II GB:PROTEIN_ID AAK86702.1 GB:DB_XREF GI:15155890 GB:GENE:GENE ptrB LENGTH 699 SQ:AASEQ MPIFKNLPAAPTAEKRPVQDTHHGITRTDDYAWFRADNWQAMFKDPTLLDPAIRAHLEAENAYMEAAMGDTRALQEKLFEEMKGRIKQDDSSVPVNDGPYAYGTLFVTGGEQPHYFRTPRDGGDKHVLLDGDKEAQGKDYFRLAGLNQSSDHSHGIWGYDDKGSEYFTLRIRNLETGEDLADVVENTGGGGAWAPDGKSFFYTLQDENHRPSKVFHHIIGEPQSADRLVYEEKDPGFFMGVGASVLDDFIFIDIHDHETSEYRILSTKDLTAEPKVVAEREEGIEYSMCEGGDVFFILTNDGDAKDFRIMEAPVTAPGKENWKEVVPHEPGRLILSVDAYARHLIWLERRDGLPRIVIRDRRTGEEHSIAFAEEAYSLGLHGAAEYDTDVIRFSYSSMTTPSQLFDYNMVTRDRTLLKTQEVPSGHNPDDYITRRIMAPAHDGELVPVSLLYRKDVPLDGSAPCLLYGYGAYGITIPASFSTTTLSLADRGFIYAIAHIRGGKDKGFEWYETGKMENKQNTFKDFIAAADHLVQEGFTSYEGIIAEGGSAGGMLMGAVANMAPEKFAGIIAAVPFVDVLTTMLDDTLPLTPPEWPEWGNPLESEEEYGWIAAYSPYDNVGEKSYPPLLALSGLTDPRVTYWEPTKWVAKLREKTTGEAPILLKTNMAAGHGGKSGRFQRLEEVAFEYAFALKVAGKDAV GT:EXON 1|1-699:0| BL:SWS:NREP 1 BL:SWS:REP 11->694|PTRB_ECOLI|e-111|37.5|670/686| PROS 524->554|PS00708|PRO_ENDOPEP_SER|PDOC00587| SEG 247->257|ddfifidihdh| SEG 541->552|egiiaeggsagg| SEG 579->597|lttmlddtlpltppewpew| BL:PDB:NREP 1 BL:PDB:REP 11->693|2bklB|8e-61|28.4|652/677| RP:PDB:NREP 2 RP:PDB:REP 103->201|3aahA|5e-05|10.9|92/571| RP:PDB:REP 463->695|1e5tA|5e-28|27.9|233/710| RP:PFM:NREP 2 RP:PFM:REP 14->414|PF02897|2e-77|45.6|386/396|Peptidase_S9_N| RP:PFM:REP 487->679|PF00326|3e-19|33.9|186/208|Peptidase_S9| HM:PFM:NREP 2 HM:PFM:REP 11->419|PF02897|1.9e-88|32.7|394/415|Peptidase_S9_N| HM:PFM:REP 479->696|PF00326|2.7e-71|45.0|211/213|Peptidase_S9| GO:PFM:NREP 4 GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF02897|IPR004106| GO:PFM GO:0006508|"GO:proteolysis"|PF02897|IPR004106| GO:PFM GO:0006508|"GO:proteolysis"|PF00326|IPR001375| GO:PFM GO:0008236|"GO:serine-type peptidase activity"|PF00326|IPR001375| RP:SCP:NREP 2 RP:SCP:REP 6->423|1e5tA1|9e-29|17.4|403/430|b.69.7.1| RP:SCP:REP 427->695|1e5tA2|2e-72|31.7|265/280|c.69.1.4| HM:SCP:REP 4->427|1qfmA1|2.3e-96|31.1|405/430|b.69.7.1|1/1|Peptidase/esterase 'gauge' domain| HM:SCP:REP 431->673|1n1mA2|5.7e-40|26.3|232/256|c.69.1.24|1/1|alpha/beta-Hydrolases| OP:NHOMO 905 OP:NHOMOORG 517 OP:PATTERN ------1--------1--------------------------------------1111111------- 3321112222211121222-221122322321222222221--112311221221111-1111-111--121111111---------------------3231232-2-1---------------11-11111-1111111-----111111-11-----------42211------------1-1-----1---------------------------------------------------------------------------------------------1---111---11------------------------------------------------------------------1---------1-13334111111122211-1211211111111111-11211211131-21112242221111232------------------1113--2-----------1111121121-2112----1232221----11111111111111-1111-1111---------1--------1--------2-1111111------2---------------------------42-----------------------------3312--331313233311233332334322--1-11-------11111111112111111-11111111111111111111111111111111111111111113--111111-111111111111---3------------1--------------------------1-11111111111111111-----------221111114422222222222221111------------------2--------------------------------------1- ----224-634-556--1----------------------------------1------------------------------------111-111----111111-2944363342212122134171BE41433213262212221112225122221121-111211---22-342H111458587-572343533 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 683 STR:RPRED 97.7 SQ:SECSTR #######cccccccccccEEEETTEEEEcTTGGGGcTTc#######TTTcHHHHHHHHHHHHHHHHHHHHTcTTHHHHHHHHHHHHcccEEcccEEETTEEEEEEEcTTccccEEEEEEcTTcccEEEEcGGGccccccEEEEEEEEEcTTccEEEEEEEETTccccEEEEEETTTccccccccccccTccEEcTTccEEEEEEcTTGGGGcEEEEEETTccGGGcEEEEccccTTcEEEEcTTcccEEEEEEETTTEEEEEEcTTccccEEEEEccccccccccEEEEEETTEEcEEEEccccEEEEEEEEcTTccTTTccccccccccTTEEccccEEcTcccEEEEcccccEEEEEETTccEEEcEEEEEEEEEcEEEEETTTTEEEEEEEcTTccccEEEEEEETTTEEcccEEEcTTTccTHHHHHHHHHHHHHTcccccEEEEETTEEEEEccccTcEEEEccccTTccccccccHHHHHHHHHccEEEEEccTTccTTHHHHHHTTcGGGTHHHHHHHHHHHHHHHHTTcccGGGEEEEEETHHHHHHHHHHHHcGGGccEEEEEcccccTTTGGGcTTGGGGHHHHccTTcHHHHHHHHHHcGGGcccccccTccccEEEEEEETTcccccTHHHHHHHHHHHHHTTccccEEEEEEccccccTTccHHHHHHHHHHHHHHHHHHHTcc## DISOP:02AL 1-11| PSIPRED cccccccccccccccccEEEEEcccEEEcccHHHccccHHHHHcccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccccEEEEEEEcccccccEEEEcHHHHcccccEEEEEEEEEcccccEEEEEEEccccEEEEEEEEEccccEEccccccccccEEEEEEcccEEEEEEEcccccccEEEEEEccccccccEEEEEcccccEEEEEEEEEcccEEEEEEEcccccEEEEEEEEcccccEEEEccccccEEEEEEccccEEEEEEEccccccEEEEEEEEEcccccccEEEEcccccEEEEEEEEcccEEEEEEEcccEEEEEEEEccccEEEEEEcccccEEEEEcccccccccEEEEEEEccccccEEEEEEcccccEEEEEEcccccccccccccEEEEEEEcccccEEEEEEEEcccccccccccEEEEEEccccccccccccHHHHHHHHcccEEEEEEccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHEEEEEEcHHHHHHHHHHHccccEEEEEEEEcccccHHHHHcccccccccHHHHHcccccccHHHHHHHHHcccHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHcccccc //