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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : purD
DDBJ      :purD         phosphoribosylamine--glycine ligase
Swiss-Prot:PUR2_AGRT5   RecName: Full=Phosphoribosylamine--glycine ligase;         EC=6.3.4.13;AltName: Full=GARS;AltName: Full=Glycinamide ribonucleotide synthetase;AltName: Full=Phosphoribosylglycinamide synthetase;

Homologs  Archaea  60/68 : Bacteria  827/915 : Eukaryota  183/199 : Viruses  0/175   --->[See Alignment]
b.84.2c.30.1d.142.1
:423 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->420 1gsoA PDBj e-126 57.0 %
:RPS:PDB   1->421 1bxrA PDBj 4e-54 14.1 %
:RPS:SCOP  1->101 1vkzA2  c.30.1.1 * 3e-26 34.1 %
:RPS:SCOP  102->322 1gsoA3  d.142.1.2 * 4e-37 52.3 %
:RPS:SCOP  324->420 1gsoA1  b.84.2.1 * 8e-25 51.6 %
:HMM:SCOP  1->101 1gsoA2 c.30.1.1 * 5e-36 70.3 %
:HMM:SCOP  102->323 1gsoA3 d.142.1.2 * 1e-59 34.2 %
:HMM:SCOP  324->420 1gsoA1 b.84.2.1 * 1.4e-29 49.5 %
:RPS:PFM   1->100 PF02844 * GARS_N 6e-33 69.0 %
:RPS:PFM   101->291 PF01071 * GARS_A 8e-64 68.6 %
:RPS:PFM   326->418 PF02843 * GARS_C 7e-17 52.7 %
:HMM:PFM   101->292 PF01071 * GARS_A 5.8e-81 55.7 192/194  
:HMM:PFM   1->100 PF02844 * GARS_N 4.5e-43 66.0 100/100  
:HMM:PFM   326->417 PF02843 * GARS_C 1.1e-32 51.1 92/93  
:BLT:SWISS 1->423 PUR2_AGRT5 0.0 100.0 %
:PROS 286->293|PS00184|GARS

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86455.2 GT:GENE purD GT:PRODUCT phosphoribosylamine--glycine ligase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(637485..638756) GB:FROM 637485 GB:TO 638756 GB:DIRECTION - GB:GENE purD GB:PRODUCT phosphoribosylamine--glycine ligase GB:PROTEIN_ID AAK86455.2 GB:DB_XREF GI:159139718 GB:GENE:GENE purD LENGTH 423 SQ:AASEQ MKVLLIGSGGREHALAWKIAQSPLIDALYAAPGNPGIADHATLVSLDVEDHAAVIAFAKEKAIDFVVIGPEAPLVAGLADDLRAAGIATFGPSKAAAQLEGSKGFTKDLCARYDIPTGAYERFKAAEPAKDYVRAQGAPIVIKADGLAAGKGVTVAMTEAEALAAIDDCFDGAFGTAGTEVVVEAFLDGEEASFFCLSDGKTALALATAQDHKRVGDGDTGPNTGGMGAYSPAPVMTPAMVERTMKEIIEPTISGMAKDGNPFSGVFFAGLMITAKGPELIEYNVRFGDPECQVLMMRLKSDLLPILYATATGTLDKVQAEWRDDAALTVVLASKGYPGAYDKNTPIAHIPEASEEAKVFHAGTALKDGKLVATGGRVLNVTAFGRNVTEAQARAYALADKVEWENGFCRRDIGWQAIAREKA GT:EXON 1|1-423:0| SW:ID PUR2_AGRT5 SW:DE RecName: Full=Phosphoribosylamine--glycine ligase; EC=6.3.4.13;AltName: Full=GARS;AltName: Full=Glycinamide ribonucleotide synthetase;AltName: Full=Phosphoribosylglycinamide synthetase; SW:GN Name=purD; OrderedLocusNames=Atu0647; ORFNames=AGR_C_1152; SW:KW ATP-binding; Complete proteome; Ligase; Magnesium; Manganese;Metal-binding; Nucleotide-binding; Purine biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->423|PUR2_AGRT5|0.0|100.0|423/423| GO:SWS:NREP 5 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006164|"GO:purine nucleotide biosynthetic process"|Purine biosynthesis| PROS 286->293|PS00184|GARS|PDOC00164| BL:PDB:NREP 1 BL:PDB:REP 1->420|1gsoA|e-126|57.0|412/419| RP:PDB:NREP 1 RP:PDB:REP 1->421|1bxrA|4e-54|14.1|396/1073| RP:PFM:NREP 3 RP:PFM:REP 1->100|PF02844|6e-33|69.0|100/100|GARS_N| RP:PFM:REP 101->291|PF01071|8e-64|68.6|191/193|GARS_A| RP:PFM:REP 326->418|PF02843|7e-17|52.7|93/93|GARS_C| HM:PFM:NREP 3 HM:PFM:REP 101->292|PF01071|5.8e-81|55.7|192/194|GARS_A| HM:PFM:REP 1->100|PF02844|4.5e-43|66.0|100/100|GARS_N| HM:PFM:REP 326->417|PF02843|1.1e-32|51.1|92/93|GARS_C| GO:PFM:NREP 4 GO:PFM GO:0004637|"GO:phosphoribosylamine-glycine ligase activity"|PF02844|IPR020562| GO:PFM GO:0009113|"GO:purine base biosynthetic process"|PF02844|IPR020562| GO:PFM GO:0004637|"GO:phosphoribosylamine-glycine ligase activity"|PF02843|IPR020560| GO:PFM GO:0009113|"GO:purine base biosynthetic process"|PF02843|IPR020560| RP:SCP:NREP 3 RP:SCP:REP 1->101|1vkzA2|3e-26|34.1|85/85|c.30.1.1| RP:SCP:REP 102->322|1gsoA3|4e-37|52.3|216/218|d.142.1.2| RP:SCP:REP 324->420|1gsoA1|8e-25|51.6|95/96|b.84.2.1| HM:SCP:REP 1->101|1gsoA2|5e-36|70.3|101/0|c.30.1.1|1/1|PreATP-grasp domain| HM:SCP:REP 102->323|1gsoA3|1e-59|34.2|222/224|d.142.1.2|1/1|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 324->420|1gsoA1|1.4e-29|49.5|97/99|b.84.2.1|1/1|Rudiment single hybrid motif| OP:NHOMO 1178 OP:NHOMOORG 1070 OP:PATTERN --11--1111111111-111111111111121111111111111111111111111111-1111--11 1111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111---11111211111---------------11111111111222221-1211111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111-2-11111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111-1111111111111111111111111111111111111111111111111111-111111111111---------------111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111------11111111111111111-11111111111111111111111112111111111111111111111111111111111111111--1111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111--------1---------------------------1-11111111111 ----111-----11111121111111111111111111111121111112222222111111111111111111111-1111111111-12111111111111111-12-2121214111111121111AB2-11211111111-11111111314323333121-1211751221211H1111122441111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 423 STR:RPRED 100.0 SQ:SECSTR cEEEEEccccccTTccHHHHHTTccEEEEEcccTTccTTcccEEEcccccHHHHHHHHHHHcccEEEccccHHHHHHHTTHHHHHTcEEccccHHHHHHHHcHHHHHHHHHHTTcccccEEEEccHHHHHHHHHHHcccEEEEETTccTTTTcEEEccHHHHHHHHHHHHHHcHHcccccEEEEcccTTcEEEEEEEEEcTTccEEEEEEEEEcccTEEETccTTcccEEEccccccHHHHHHHHHHHHHHHHHHHHHHTcccEEEEEEEEEETTTEEEEEEEEccccHHHHHHHHHHTccHHHHHHHHHTTccTTTcccGGGTTccccccccccccEEEEEEEccGGGcTTcEEccTTEEEEEccccccccccccccEEEEEEEccHHHHHHHHHHHccHcccccccccccTTcTTHHHHHH DISOP:02AL 422-424| PSIPRED cEEEEEcccHHHHHHHHHHHHcccccEEEEEcccHHHHHcccEEEcccccHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHcccEEEcccHHHHHHHccHHHHHHHHHHcccccccccEEccHHHHHHHHHHccccEEEEEcccccccEEEEEccHHHHHHHHHHHHHHHccccccEEEEEEEEccEEEEEEEEEccccEEEEEHHHHHHHHccccccccccccEEEcccccccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEcccccccHHHHHHHHHccHHHHHHHHHcccccccccEEccccEEEEEEcccccccccccccEEccccccccccEEEEEEEEEEccEEEEcccEEEEEEEEcccHHHHHHHHHHHHHHcccccEEEccccccHHHHHHcc //