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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : pycA
DDBJ      :pycA         pyruvate carboxylase
Swiss-Prot:             

Homologs  Archaea  61/68 : Bacteria  867/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
a.5.7b.84.1b.84.2c.1.10c.30.1d.126.1d.142.1
:1153 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->1067 2qf7B PDBj 0.0 91.2 %
:BLT:PDB   1086->1149 1o78A PDBj 1e-11 45.3 %
:RPS:PDB   2->1149 3bg5A PDBj 0.0 49.3 %
:RPS:SCOP  10->128 1h70A  d.126.1.3 * 2e-23 14.3 %
:RPS:SCOP  122->365 1w93A3  d.142.1.2 * 6e-71 38.2 %
:RPS:SCOP  347->458 1bncA1  b.84.2.1 * 2e-37 34.5 %
:RPS:SCOP  533->838 1rqbA2  c.1.10.5 * e-100 36.0 %
:RPS:SCOP  839->1012 1rqbA1  a.5.7.2 * 8e-53 30.9 %
:RPS:SCOP  1081->1139 2pnrC1  b.84.1.1 * 3e-14 23.7 %
:HMM:SCOP  1->121 1w96A2 c.30.1.1 * 2.4e-40 51.8 %
:HMM:SCOP  91->383 1w96A3 d.142.1.2 * 8.1e-64 34.6 %
:HMM:SCOP  346->463 1dv1A1 b.84.2.1 * 1.8e-40 39.7 %
:HMM:SCOP  529->843 1rqbA2 c.1.10.5 * 2.8e-86 36.2 %
:HMM:SCOP  839->1016 1rqbA1 a.5.7.2 * 4.1e-70 50.0 %
:HMM:SCOP  1069->1152 1o78A_ b.84.1.1 * 1.4e-20 41.7 %
:RPS:PFM   3->118 PF00289 * CPSase_L_chain 3e-16 44.6 %
:RPS:PFM   128->327 PF02786 * CPSase_L_D2 1e-52 51.5 %
:RPS:PFM   351->458 PF02785 * Biotin_carb_C 2e-24 46.7 %
:RPS:PFM   547->794 PF00682 * HMGL-like 3e-09 30.5 %
:RPS:PFM   834->1034 PF02436 * PYC_OADA 5e-45 50.0 %
:RPS:PFM   1092->1148 PF00364 * Biotin_lipoyl 7e-09 40.4 %
:HMM:PFM   124->329 PF02786 * CPSase_L_D2 1.9e-74 41.3 206/211  
:HMM:PFM   834->1033 PF02436 * PYC_OADA 5.9e-73 50.0 194/196  
:HMM:PFM   2->118 PF00289 * CPSase_L_chain 8.8e-37 50.9 110/110  
:HMM:PFM   351->458 PF02785 * Biotin_carb_C 3.7e-35 36.4 107/107  
:HMM:PFM   547->793 PF00682 * HMGL-like 6e-26 25.6 223/237  
:HMM:PFM   1085->1149 PF00364 * Biotin_lipoyl 1.8e-19 44.6 65/74  
:BLT:SWISS 3->1149 PYC_BACSU 0.0 50.1 %
:PROS 1108->1125|PS00188|BIOTIN
:PROS 161->175|PS00866|CPSASE_1
:PROS 295->302|PS00867|CPSASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88444.2 GT:GENE pycA GT:PRODUCT pyruvate carboxylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2711719..2715180) GB:FROM 2711719 GB:TO 2715180 GB:DIRECTION - GB:GENE pycA GB:PRODUCT pyruvate carboxylase GB:PROTEIN_ID AAK88444.2 GB:DB_XREF GI:159140602 GB:GENE:GENE pycA LENGTH 1153 SQ:AASEQ MKISKILVANRSEIAIRVFRAANELGIKTVAIWAEEDKLSLHRFKADESYQVGRGPHLAKDMGPIESYLSIEEVIRVAKLSGADAIHPGYGLLSESPEFVEACNKAGITFIGPTPDTMRQLGNKVAARNLAISVDVPVVPATNPLPDDIAEVERMAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAATNYIGAGTVEYLMDADTGKFYFIEVNPRIQVEHTVTEVVTGIDIVKAQIHILEGAAIGTAESGVPKQEDIRLNGHALQCRITTEDPEHNFIPDYGRITAYRSASGFGIRLDGGTSYTGAVITRYYDPLLVKVTAWAPEPDEAISRMDRALREFRIRGVATNLTFLEAIIGHDSFRNNTYTTRFIDSTPELFAQVKRQDRATKLLTYLADVTVNGHPETKGRAKPADKAAKPIVPYIDAPTPDGTKQLLDKLGPKGFADWMRNEKRVLVTDTTMRDGHQSLLATRVRTHDIARVASVYSKALPQLLSLECWGGATFDVSMRFLTEDPWERLSLIREGAPNLLLQMLLRGANGVGYKNYPDNVVKYFVRQAARGGVDLFRVFDCLNWVENMRVSMDAIAEENKLCEATICYTGDLLNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIHFHTHDTSGISAATVLAAVDAGVDAVDAAMDAFSGNTSQPCLGSIVEALSGSERDTGLDTEWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHEMPGGQFTNLKEQARSLGLESRWHEVAQAYADANRMFGDIVKVTPSSKVVGDMALMMVSQDLTVADVENPDREVSFPDSVVSMLKGDLGQSPGGWPEALQKKALKGEKPYTVRPGSLLEDADLDAERKVIETKLERKVDDFEFASYLMYPKVFTDFALTAETYGPVSVLPTHAYFYGMEDGEELFADIERGKTLVIVNQASSGIDDKGMVTVFFEINGQPRRIKVPDRAHGASGSAVRRKAEPGNASHIGAPMPGVISRVFINQGQEVKAGDVLLSIEAMKMETALHAERDGKIAEVLVKPGDQIDAKDLLISYAE GT:EXON 1|1-1153:0| BL:SWS:NREP 1 BL:SWS:REP 3->1149|PYC_BACSU|0.0|50.1|1138/1148| PROS 1108->1125|PS00188|BIOTIN|PDOC00167| PROS 161->175|PS00866|CPSASE_1|PDOC00676| PROS 295->302|PS00867|CPSASE_2|PDOC00676| SEG 755->775|aatvlaavdagvdavdaamda| BL:PDB:NREP 2 BL:PDB:REP 3->1067|2qf7B|0.0|91.2|1014/1016| BL:PDB:REP 1086->1149|1o78A|1e-11|45.3|64/84| RP:PDB:NREP 1 RP:PDB:REP 2->1149|3bg5A|0.0|49.3|1132/1137| RP:PFM:NREP 6 RP:PFM:REP 3->118|PF00289|3e-16|44.6|101/102|CPSase_L_chain| RP:PFM:REP 128->327|PF02786|1e-52|51.5|196/207|CPSase_L_D2| RP:PFM:REP 351->458|PF02785|2e-24|46.7|107/107|Biotin_carb_C| RP:PFM:REP 547->794|PF00682|3e-09|30.5|220/237|HMGL-like| RP:PFM:REP 834->1034|PF02436|5e-45|50.0|190/191|PYC_OADA| RP:PFM:REP 1092->1148|PF00364|7e-09|40.4|57/74|Biotin_lipoyl| HM:PFM:NREP 6 HM:PFM:REP 124->329|PF02786|1.9e-74|41.3|206/211|CPSase_L_D2| HM:PFM:REP 834->1033|PF02436|5.9e-73|50.0|194/196|PYC_OADA| HM:PFM:REP 2->118|PF00289|8.8e-37|50.9|110/110|CPSase_L_chain| HM:PFM:REP 351->458|PF02785|3.7e-35|36.4|107/107|Biotin_carb_C| HM:PFM:REP 547->793|PF00682|6e-26|25.6|223/237|HMGL-like| HM:PFM:REP 1085->1149|PF00364|1.8e-19|44.6|65/74|Biotin_lipoyl| GO:PFM:NREP 7 GO:PFM GO:0003824|"GO:catalytic activity"|PF00289|IPR005481| GO:PFM GO:0008152|"GO:metabolic process"|PF00289|IPR005481| GO:PFM GO:0003824|"GO:catalytic activity"|PF02786|IPR005479| GO:PFM GO:0005524|"GO:ATP binding"|PF02786|IPR005479| GO:PFM GO:0008152|"GO:metabolic process"|PF02786|IPR005479| GO:PFM GO:0016874|"GO:ligase activity"|PF02785|IPR005482| GO:PFM GO:0003824|"GO:catalytic activity"|PF00682|IPR000891| RP:SCP:NREP 6 RP:SCP:REP 10->128|1h70A|2e-23|14.3|105/255|d.126.1.3| RP:SCP:REP 122->365|1w93A3|6e-71|38.2|233/267|d.142.1.2| RP:SCP:REP 347->458|1bncA1|2e-37|34.5|110/116|b.84.2.1| RP:SCP:REP 533->838|1rqbA2|e-100|36.0|297/303|c.1.10.5| RP:SCP:REP 839->1012|1rqbA1|8e-53|30.9|162/168|a.5.7.2| RP:SCP:REP 1081->1139|2pnrC1|3e-14|23.7|59/61|b.84.1.1| HM:SCP:REP 1->121|1w96A2|2.4e-40|51.8|114/0|c.30.1.1|1/1|PreATP-grasp domain| HM:SCP:REP 91->383|1w96A3|8.1e-64|34.6|263/0|d.142.1.2|1/1|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 346->463|1dv1A1|1.8e-40|39.7|116/0|b.84.2.1|1/1|Rudiment single hybrid motif| HM:SCP:REP 529->843|1rqbA2|2.8e-86|36.2|301/303|c.1.10.5|1/1|Aldolase| HM:SCP:REP 839->1016|1rqbA1|4.1e-70|50.0|166/0|a.5.7.2|1/1|post-HMGL domain-like| HM:SCP:REP 1069->1152|1o78A_|1.4e-20|41.7|84/0|b.84.1.1|1/1|Single hybrid motif| OP:NHOMO 3932 OP:NHOMOORG 1123 OP:PATTERN --212222222222221111111421111-12223223222222223223333211122221----22 2563A33422234255555-551156444444566656BC275532213343736443334572568453423332221344766464665414211--2122543222411111111111111123246232243333642233412132222211111111221311111111111111111121122135544444444444444455555544455555243333336344444444444444444444411144131115511442331322332224133133222222222224444444544344222222222347334222333232364333222324-13325344346423431145123233855511111356453317575644444444445-33333432455186687667684444434456444455732333333422225551111111111--11111111111111111136331387553334433333333334444134466986225543454584557A1134445522222222322845362324332342231555454535444464455434533333414111111124322112254433344354444344444463444561-12135------13341121112111111-1111111111111111112553333224143534445433334211111111111111111111111142222244443564422222321111122255555324334477774767944445766211111111222232333333222334333333322222332222233--------111-------------------------1122233333132 1111334-73314453466655465664444443335444444555443546754443333353333323435335525532333322-57444333443435876-5548566CB845555548A5C5PvB-C8D45555557745635A5375744B7DQ4B455F549C7D54453u3346561395466775458 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1153 STR:RPRED 100.0 SQ:SECSTR TcccEEEEcccHHHHHHHHHHHHHTTcEEEEEEccTTTTcGGGGTccEEEEccTTccGHccccHHHHTTcHHHHHHHHHHTTccEEEccccccTTcHHHHHHHHTTTcEEccccHHHHHHHHcTTHHHHHHHHTTccccccccccccccccGGGTGGGccccEEEEEcccEEccccHHHHTTGTHHHHHHGGTTHHHHccccccEEEEEcccccEEEEEEEEEcTTccEEEEEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHTTccEEEEEEEEEETTETEEEEEEEEccccTTHHHHHHHHcccHHHHHHHHHTTccTTcTTTccccGGGcccccEEEEEEEccEEGGGTTEEccccccEEEccccTTEEEEEccccccccccTTcccccEEEEEEEccHHHHHHHHHHHHHHcEEEcccccHHHHHHHHHcHHHHHccccTTHHHHcGGGGcccccccHHHHHHHHHHHHHHHccTTcccccccccccccccccHHHHHTcccHHHHHHHHHHHHHHHHHHHccccEEEEcTTTHHHHHHcTTcccHHHHHHHHHHHHHHTTTccEEEEEETTHHHHHHHTTcccHHHHHHHHHHHccccEEEEEEETTTcTccccccHHHHHHHHHHHHHTTccEEEEEcTTccGGGGHHHHHHHHHTTcEEEEEEEccccTTcTTTccccHHHHHHHHHHHHHTTccEEEEEETTccccHHHHHHHHHHHHHHccccEEEEEccTTccHHHHHHHHHHTTccEEEEccGGGcccTccccHHHHHHHTTTccccccccHHHHHHHHHHHHHHHHTTGGGcccccccccTHHHHcccTTHHHHHHHHHHTTTcGGGHHHHHHHHHHHHHHTTcccccTTHHHHHHHHHHHHHHTTccTTHHHHcGGGccccHHHHHHHTTcccccTTcccHHHHHHHHTTcccccccTTTTcccccHHHHHHHHHHHccccccHHHHHHHHHcHHHHHHHHHHHHHHccGGGccHHHHHHcccTTcEEEEEEETTEEEEEEEEEEccccTTcEEEEEEEETTEEEEEEEEccccccccccccccccTTcTTEEEccccEEEEEEcccTTcEEcTTcEEEEEEccccEEEEEccccEEccEEcccTTcEEcTTcEEEEEEE DISOP:02AL 1-1,498-500,1063-1085| PSIPRED ccccEEEEEccHHHHHHHHHHHHHcccEEEEEcccHHHccccHHHccEEEEEccccccccccccccccccHHHHHHHHHHccccEEEccccccccccHHHHHHHHcccEEEcccHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHHHccccEEEEEcccccccccEEEccHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEccccEEEEEEcccccEEEcccEEEEcccccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccEEEEEEccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccHHHcccccEEEEEEEEccccccccccccEEEEEEEccccccEEEEcccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHEEEEcccccHHHHHHHHccHHHHcccccccHHHccHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHccHHHHHHHHHccccEEEEEccccccccccccccccHHHHHHHHHHHHHHHcccEEEccccccHHHHEHHHHcccHHHHHHHHHHHcccccEEHHHHHccccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEccccHHHHHHHHHHHHccccHHHHHcccEEEcccHHHHHHHHHHcccccccccHHHHHHHHccccccccccccccccccHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHccccccccccHHHHHcccccccEEEEEccccEEEEEEcccccccccccEEEEEEccccEEEEEEccccccccccccccccccccccEEEcccccEEEEEEcccccccccccEEEEEEEEccccEEEcccccEEEEEEcccccccccccEEEEEEc 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