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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : radA
DDBJ      :radA         DNA repair protein
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  838/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
c.37.1d.14.1g.41.5
:468 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   70->242 2dr3B PDBj 6e-09 29.5 %
:RPS:PDB   1->47 2crcA PDBj 3e-12 19.1 %
:RPS:PDB   70->285 3dvlC PDBj 5e-43 24.6 %
:RPS:SCOP  1->36 1b71A2  g.41.5.1 * 4e-11 27.8 %
:RPS:SCOP  64->274 1tf7A1  c.37.1.11 * 3e-36 22.3 %
:RPS:SCOP  293->455 1xhkA  d.14.1.10 * 1e-21 14.3 %
:HMM:SCOP  64->273 1ubeA1 c.37.1.11 * 1.9e-57 45.7 %
:HMM:SCOP  254->457 1xhkA_ d.14.1.10 * 1e-38 38.0 %
:RPS:PFM   71->256 PF06745 * KaiC 2e-49 62.0 %
:HMM:PFM   71->141 PF06745 * KaiC 2.5e-15 35.2 71/226  
:HMM:PFM   155->261 PF06745 * KaiC 3.7e-08 26.0 100/226  
:HMM:PFM   353->428 PF05362 * Lon_C 1.5e-07 32.9 76/205  
:BLT:SWISS 5->421 RADA_RICCN e-113 49.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86886.1 GT:GENE radA GT:PRODUCT DNA repair protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1069298..1070704) GB:FROM 1069298 GB:TO 1070704 GB:DIRECTION - GB:GENE radA GB:PRODUCT DNA repair protein GB:PROTEIN_ID AAK86886.1 GB:DB_XREF GI:15156108 GB:GENE:GENE radA LENGTH 468 SQ:AASEQ MAKAKTQFVCQNCGTVHNRWAGKCEGCGEWNTIVEEDPMGGIGSGPGKVPKKGRPVTLTSLSGEIEEAPRIPTGISELDRATGGGFVRGSAVLIGGDPGIGKSTLLMQAAAALSRRGHRVIYVSGEEAVAQVRLRAQRLGSADTDVLLAAETNVEDILATVSEGKRPDLIIIDSIQTLWSDTADSAPGTVTQVRTGVQAMIRFAKQTGATMVLVGHVTKEGQIAGPRVVEHMVDAVLYFEGDRGHHYRILRTVKNRFGPTDEIGVFEMSDGGLREVSNPSELFLGERNEKSPGAAVFAGIEGTRPVLVEVQALVAATSLGTPRRAVVGWDSSRLAMILAVLEAHCGVKLGQHDVYLNVAGGYRISEPAADMAIASALVSSLAGLALPADCVYFGEISLSGAVRPVAHTVQRLKEAEKLGFSAALLPSGSAELPKAGKGRWTEIESLPDLVAHIAGSGNRFKQVEDDEY GT:EXON 1|1-468:0| BL:SWS:NREP 1 BL:SWS:REP 5->421|RADA_RICCN|e-113|49.5|412/444| SEG 372->388|aiasalvsslaglalpa| BL:PDB:NREP 1 BL:PDB:REP 70->242|2dr3B|6e-09|29.5|166/240| RP:PDB:NREP 2 RP:PDB:REP 1->47|2crcA|3e-12|19.1|47/52| RP:PDB:REP 70->285|3dvlC|5e-43|24.6|207/486| RP:PFM:NREP 1 RP:PFM:REP 71->256|PF06745|2e-49|62.0|179/202|KaiC| HM:PFM:NREP 3 HM:PFM:REP 71->141|PF06745|2.5e-15|35.2|71/226|KaiC| HM:PFM:REP 155->261|PF06745|3.7e-08|26.0|100/226|KaiC| HM:PFM:REP 353->428|PF05362|1.5e-07|32.9|76/205|Lon_C| RP:SCP:NREP 3 RP:SCP:REP 1->36|1b71A2|4e-11|27.8|36/44|g.41.5.1| RP:SCP:REP 64->274|1tf7A1|3e-36|22.3|206/242|c.37.1.11| RP:SCP:REP 293->455|1xhkA|1e-21|14.3|161/185|d.14.1.10| HM:SCP:REP 64->273|1ubeA1|1.9e-57|45.7|208/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 254->457|1xhkA_|1e-38|38.0|171/0|d.14.1.10|1/1|Ribosomal protein S5 domain 2-like| OP:NHOMO 902 OP:NHOMOORG 870 OP:PATTERN -----1------------11-11------1-1--1---------1-------1-----1--------- ----11111111-111111-11--1111111-11111111111111-11111111111--111111111111111111----111111111111111--11111111111111111111111111111111111112111111111111-1111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111221112121111111111111-111111111311111111111111111111111211111111111111111111211-11111--1111111111111111-11-111111111111111111111111211111111111111121111111111211111111111111111111111111111111111111112111111111111-11111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111111111111111111111111-11111111111111111111111111111211111111111111111111111111111111111111111--11111111-----1-111--------------------------1111111111--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------1-1-7111111122-16112111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-2, 34-68, 182-191, 279-291, 315-327, 456-468| PSIPRED cccccEEEEEcccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEccccccccccccccccHHHHHHHcccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHccccccccEEEccccHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHcEEEEEEEccccEEEEEEEEEcccccccccEEEEEccccccccccccccccHHHHcccccEEEEEEEEccccEEEEEEEEEccccccccEEEEEHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEEEEccccEEEEcccHHHHHHHHHHccccEEEEccccccccccccEEEEEcccHHHHHHHHccccccccccccccc //