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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : radC
DDBJ      :radC         DNA repair protein
Swiss-Prot:RADC_AGRT5   RecName: Full=DNA repair protein radC homolog;

Homologs  Archaea  9/68 : Bacteria  677/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.60.2
:280 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   155->280 2qlcC PDBj 2e-18 35.2 %
:RPS:PDB   96->147 3c1yA PDBj 2e-04 25.0 %
:RPS:PDB   204->266 2cncA PDBj 7e-04 7.9 %
:RPS:SCOP  103->135 1kftA  a.60.2.3 * 8e-04 21.2 %
:HMM:SCOP  70->149 2a1jB1 a.60.2.5 * 2e-06 32.1 %
:RPS:PFM   158->274 PF04002 * DUF2466 6e-32 53.8 %
:HMM:PFM   160->276 PF04002 * DUF2466 2.2e-45 47.0 117/123  
:BLT:SWISS 1->280 RADC_AGRT5 e-148 100.0 %
:PROS 229->234|PS01302|UPF0758
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87386.2 GT:GENE radC GT:PRODUCT DNA repair protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1588783..1589625 GB:FROM 1588783 GB:TO 1589625 GB:DIRECTION + GB:GENE radC GB:PRODUCT DNA repair protein GB:PROTEIN_ID AAK87386.2 GB:DB_XREF GI:159140119 GB:GENE:GENE radC LENGTH 280 SQ:AASEQ MAKRPALPSADLSPTSGFEAGEGDLFNGADERGFFAEPRSAPKKAARAVTATEQEADAAHYHGHRDRLRTRYRDGGDAALADYELLELLLFRLIPRRDTKPIAKALIARFGTLGSVLGAPLPLLQEVKGVGEAVALDLKLVASVSQRMLKSEIRNKQVLGSWSSVIDYCHAAMAHETREQFRILFLDKRNVLIADEVQGQGTVDHTPVYPREIVRRALELSSTALILIHNHPSGDPTPSRADIEMTKTIIDTAKPLGITVHDHIIIGKDGHASFKGLRLI GT:EXON 1|1-280:0| SW:ID RADC_AGRT5 SW:DE RecName: Full=DNA repair protein radC homolog; SW:GN Name=radC; OrderedLocusNames=Atu1607; ORFNames=AGR_C_2959; SW:KW Complete proteome; DNA damage; DNA repair. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->280|RADC_AGRT5|e-148|100.0|280/280| GO:SWS:NREP 2 GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| PROS 229->234|PS01302|UPF0758|PDOC01006| SEG 74->90|dggdaaladyellelll| BL:PDB:NREP 1 BL:PDB:REP 155->280|2qlcC|2e-18|35.2|125/125| RP:PDB:NREP 2 RP:PDB:REP 96->147|3c1yA|2e-04|25.0|52/349| RP:PDB:REP 204->266|2cncA|7e-04|7.9|63/350| RP:PFM:NREP 1 RP:PFM:REP 158->274|PF04002|6e-32|53.8|117/123|DUF2466| HM:PFM:NREP 1 HM:PFM:REP 160->276|PF04002|2.2e-45|47.0|117/123|DUF2466| RP:SCP:NREP 1 RP:SCP:REP 103->135|1kftA|8e-04|21.2|33/56|a.60.2.3| HM:SCP:REP 70->149|2a1jB1|2e-06|32.1|78/0|a.60.2.5|1/1|RuvA domain 2-like| OP:NHOMO 962 OP:NHOMOORG 687 OP:PATTERN -------------------------------------------11111-1111--------------- ----------------------------------------------------------------------------------11-1111121-1111--11311112111--------------1111221111-2111112221111111111111------11111111-----------------1112-11111111211111111111111112123111111111112111-11111111111111111111111111111111111---11111111111111111111111111111111111111111111111112111111111111111112112121211111112222111111131111224-2211111112111121111111111111111-11111111122--11111111111131-112211211112222222222221111111111111111--11-11---11-3143-21122111141111111111122111111111121112-12121326322111142111111111111111314231133111111111111-32-2125221-1211-----------------------1111233111121111211311132232221211--12113------11231214337446341-32426261453531142111213222221211111211111112123221---111121111232--11-1-111111-16111111112211-111111111-11112112121122222221111---------12311322422121411424351111111--11--1111--------1-1-------------------------1-11111111--1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 177 STR:RPRED 63.2 SQ:SECSTR ###############################################################################################ccccHHHHHHHHHHHccHHHHTTccHHHHTTcTTccHHHHHHHHHHHHHHHH#######ccccccH#HHHHHHHTTccccTTccEEEEEEEcTTccEEEEEEEEEcccHHTcccHHHHHHHHHHccEEEEccTTcHHHHccTTcccccHHHHHHHHHHHHHTcEEEEEEEEccccEEETTTTTcc DISOP:02AL 1-9,38-53,234-241| PSIPRED cccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccHHHHHHHHHHHccHHHccHHHHHHHHHHcccccccHHHHHHHHHHHHccHHHHHcccHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccEEEEEEEcccccEEEEEEEEEEccccEEccHHHHHHHHHHHcccEEEEEEEcccccccccHHHHHHHHHHHHHHHHcccEEEEEEEEccccEEEHHHcccc //