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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ragA
DDBJ      :ragA         two component response regulator
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  854/915 : Eukaryota  18/199 : Viruses  0/175   --->[See Alignment]
a.4.6c.23.1
:252 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->249 2oqrA PDBj 3e-38 39.3 %
:RPS:PDB   28->246 3c3wB PDBj 4e-29 16.5 %
:RPS:SCOP  29->148 1p2fA2  c.23.1.1 * 2e-23 31.6 %
:RPS:SCOP  149->251 1ys6A1  a.4.6.1 * 3e-29 36.9 %
:HMM:SCOP  25->215 1s8nA_ c.23.1.1 * 1.7e-33 25.4 %
:RPS:PFM   30->139 PF00072 * Response_reg 9e-13 34.5 %
:RPS:PFM   173->248 PF00486 * Trans_reg_C 2e-13 48.7 %
:HMM:PFM   173->248 PF00486 * Trans_reg_C 5.1e-30 51.3 76/77  
:HMM:PFM   30->139 PF00072 * Response_reg 4.5e-25 28.2 110/112  
:BLT:SWISS 28->252 COPR_PSESM 5e-53 46.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86787.1 GT:GENE ragA GT:PRODUCT two component response regulator GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 967945..968703 GB:FROM 967945 GB:TO 968703 GB:DIRECTION + GB:GENE ragA GB:PRODUCT two component response regulator GB:PROTEIN_ID AAK86787.1 GB:DB_XREF GI:15155989 GB:GENE:GENE ragA LENGTH 252 SQ:AASEQ MENKVQEMSVTSLSGCAEKGDGAIVPHMKILVIEDDLEAAAYMTKAFREAGIVADHASDGESGLFMGCENAYDVLVIDRMLPRRDGLSVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKGKPEQDMIYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVWDYHFDPQTNVIDVHVSRLRSKIEKDFEKPLLKTIRGAGYMMKDEG GT:EXON 1|1-252:0| BL:SWS:NREP 1 BL:SWS:REP 28->252|COPR_PSESM|5e-53|46.7|225/227| BL:PDB:NREP 1 BL:PDB:REP 30->249|2oqrA|3e-38|39.3|219/226| RP:PDB:NREP 1 RP:PDB:REP 28->246|3c3wB|4e-29|16.5|206/210| RP:PFM:NREP 2 RP:PFM:REP 30->139|PF00072|9e-13|34.5|110/111|Response_reg| RP:PFM:REP 173->248|PF00486|2e-13|48.7|76/77|Trans_reg_C| HM:PFM:NREP 2 HM:PFM:REP 173->248|PF00486|5.1e-30|51.3|76/77|Trans_reg_C| HM:PFM:REP 30->139|PF00072|4.5e-25|28.2|110/112|Response_reg| GO:PFM:NREP 7 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00486|IPR001867| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00486|IPR001867| GO:PFM GO:0003677|"GO:DNA binding"|PF00486|IPR001867| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00486|IPR001867| RP:SCP:NREP 2 RP:SCP:REP 29->148|1p2fA2|2e-23|31.6|117/120|c.23.1.1| RP:SCP:REP 149->251|1ys6A1|3e-29|36.9|103/106|a.4.6.1| HM:SCP:REP 25->215|1s8nA_|1.7e-33|25.4|189/190|c.23.1.1|1/1|CheY-like| OP:NHOMO 10675 OP:NHOMOORG 877 OP:PATTERN -----------------------------1-1---------------2-3-1---------------- 9EL7S466778655CDDCC-CF44CBCCCCCBHEFFBGIH9GDGB9686A98BCC55711MKL6S7ISNPA444465558IC71447689GD-B22---23D469K8H8G1---------1111242322335262NNNTPH8ER5cJWMIHBFD9A979BBAHEBGYWdE685665675655DE688231A6GUUVUVSTVHVSWWURGHDCCDUVb8ADT8EEA99A9AeX8AB9A99899AAA9978996C675CC655466677CC655675686DED866899988888898888555556666765598666476775RKLbQQQVUUVRSLEdVV9DFBQKF8BAGO83cXL8A334667686228DAAGFFD66666FEMLMFBCELEJN9989999988D-IKIIMLLKCM91QNNNKHLOQKHHEL9BBA9EFBEEBCABBBBBBBBDCB9AFDB1121111111222344323223223222236DF67BFEBGSTWSaSMIIIEPPVSKJLKCKYTVOQQZ12JPQMAKEDYHHJO6GNEBA7AC91211111765CMQBPIGA7JA5JE99H2LHKGFGK9BDBCDLV9LH8886666666333433333DH7BK88IH9CFIO8GDCIEJJGAIGJHIIKIIJKMK--23548------FHEGEGAGGGHGGHHGG-GIHGGGGGGIGFGGGFGGEKIKCF998HGHHHHHHGHHGHGHHIFDEFFGG81CDDDDDDDEDDD--2D3333367669BPBL433333244443124BA9AC7A779GDPNQPNVUWHPSRSIONP3212132225CGGMEEEEEJJLHINQEBFBCBBB5545--B17744661-------3-2-------------------------49433444445H3 --------------2---------------------------------1-------------------------------------1-------2-2-1--1-----1--------------------------------------------------1----2-1-------3-1-2-------2--B---1-C---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 237 STR:RPRED 94.0 SQ:SECSTR ###############HHHHcccEEEEEEEEEEEcccHHHHHHHHHHHHTcTTEEEEEccHHHHHHHHHHHcccEEEEccEETTEEHHHHHHHHHHHcTTcEEEEGGGcccHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHGGGccHHHHHHHHHHHHHHHHHccTTTTccHHHHHHHHHHTTTccHHHcccHHHHHHHHHHHTccHHHHHHHHHHHHHHTTcccccHHHHHHHHHTcccEcTc DISOP:02AL 1-24, 145-154| PSIPRED ccccccccccccccccccccccccccccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccccEEEEEccccHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccEEEEccEEEEcccEEEEEccEEEEccHHHHHHHHHHHHcccccccHHHHHHHHccccccccccEEHHHHHHHHHHHcccccccEEEEEEccEEEEcccc //