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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ragB
DDBJ      :ragB         two component sensor kinase
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  830/915 : Eukaryota  95/199 : Viruses  0/175   --->[See Alignment]
a.274.1a.30.2d.122.1d.160.1
:469 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   247->443 3dgeA PDBj 3e-20 29.9 %
:RPS:PDB   189->469 3d2rB PDBj 2e-27 12.4 %
:RPS:SCOP  58->184 1erzA  d.160.1.2 * 8e-07 18.0 %
:RPS:SCOP  189->239 2aswA1  a.274.1.1 * 4e-07 21.6 %
:RPS:SCOP  226->307 2c2aA1  a.30.2.1 * 4e-09 31.7 %
:RPS:SCOP  300->469 1bxdA  d.122.1.3 * 6e-21 27.6 %
:HMM:SCOP  222->307 2c2aA1 a.30.2.1 * 2.7e-16 32.6 %
:HMM:SCOP  294->466 1jm6A2 d.122.1.4 * 2.6e-35 35.4 %
:RPS:PFM   177->234 PF00672 * HAMP 9e-04 39.3 %
:RPS:PFM   357->445 PF02518 * HATPase_c 1e-09 37.2 %
:HMM:PFM   355->449 PF02518 * HATPase_c 4.3e-22 38.0 92/111  
:HMM:PFM   167->235 PF00672 * HAMP 7.6e-16 33.8 68/70  
:HMM:PFM   242->305 PF00512 * HisKA 1.9e-12 32.8 64/68  
:BLT:SWISS 183->442 IRLS_BURPS 6e-33 34.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86788.2 GT:GENE ragB GT:PRODUCT two component sensor kinase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 968713..970122 GB:FROM 968713 GB:TO 970122 GB:DIRECTION + GB:GENE ragB GB:PRODUCT two component sensor kinase GB:PROTEIN_ID AAK86788.2 GB:DB_XREF GI:159139864 GB:GENE:GENE ragB LENGTH 469 SQ:AASEQ MARLRILFRSTAVRLSALYILLFALCAAFLVFYVTALSERLLNQQTRDAVLQEVSDVQRIYNRGGINPLLRMMERRARQPGASLYIIAGPNGEILAGNVASVQPGVFDKEGWTGFPFRYERYSESGDSVQHLATANVFMLDNGLRILIGRDLGEPTKFRALVRNALMVALAIMSGGALLIWFGIGRNALKRIDRMSAATKRIIAGDLSQRLPQGRSGDEFDRLSGSLNAMLGRIEKLNEGLRQVSDNIAHDLKTPLTRLRNKAAAALDDNDETKRRAALEGIIAESDQLIRTFNALLMISRVEAGSIAAEMTDVDMSAIAADSAELYEPVAEDAGLALESQIEPGLSVQGNRELIGQALSNLIDNAMKYACEGEGDKKLVVRLVKEPEAIVLSVADHGPGIPADKRGEVLKRFVRLDESRSKPGTGLGLSLVEAVMELHGGSLVLSDTDATNTACPGLTISMVFPISKP GT:EXON 1|1-469:0| BL:SWS:NREP 1 BL:SWS:REP 183->442|IRLS_BURPS|6e-33|34.5|255/464| TM:NTM 2 TM:REGION 17->39| TM:REGION 163->185| SEG 17->32|alyillfalcaaflvf| BL:PDB:NREP 1 BL:PDB:REP 247->443|3dgeA|3e-20|29.9|197/237| RP:PDB:NREP 1 RP:PDB:REP 189->469|3d2rB|2e-27|12.4|275/362| RP:PFM:NREP 2 RP:PFM:REP 177->234|PF00672|9e-04|39.3|56/69|HAMP| RP:PFM:REP 357->445|PF02518|1e-09|37.2|86/112|HATPase_c| HM:PFM:NREP 3 HM:PFM:REP 355->449|PF02518|4.3e-22|38.0|92/111|HATPase_c| HM:PFM:REP 167->235|PF00672|7.6e-16|33.8|68/70|HAMP| HM:PFM:REP 242->305|PF00512|1.9e-12|32.8|64/68|HisKA| GO:PFM:NREP 4 GO:PFM GO:0004871|"GO:signal transducer activity"|PF00672|IPR003660| GO:PFM GO:0007165|"GO:signal transduction"|PF00672|IPR003660| GO:PFM GO:0016021|"GO:integral to membrane"|PF00672|IPR003660| GO:PFM GO:0005524|"GO:ATP binding"|PF02518|IPR003594| RP:SCP:NREP 4 RP:SCP:REP 58->184|1erzA|8e-07|18.0|122/303|d.160.1.2| RP:SCP:REP 189->239|2aswA1|4e-07|21.6|51/54|a.274.1.1| RP:SCP:REP 226->307|2c2aA1|4e-09|31.7|82/89|a.30.2.1| RP:SCP:REP 300->469|1bxdA|6e-21|27.6|152/161|d.122.1.3| HM:SCP:REP 222->307|2c2aA1|2.7e-16|32.6|86/0|a.30.2.1|1/1|Homodimeric domain of signal transducing histidine kinase| HM:SCP:REP 294->466|1jm6A2|2.6e-35|35.4|164/190|d.122.1.4|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| OP:NHOMO 12080 OP:NHOMOORG 951 OP:PATTERN -----------------------3H547-979--11-1222242A-484GD38--------------1 9KU4N46677862578954-4D33AA555557DCCD59GC6EBD9744667579C35711DBR4O5AIKM9433374454H8523444XWpU-X111--96P3CATFaTY--------------1323A4436285ZXVSO836c2uQbYPPCCC78324565GPAXorxC342322261322JD844343A6AOOQOQLOOFQOQPPLED9897ORU6AAK7LH988888ZZ5555555555555556555576758854546665598555565565999655555433333333333444444444544472243222256RFJhNNMRRSTJNGEPON9DDBNKH43CDHC3TQIB8745546575316H6LhXXN58677IGXVUHBBNPKNQBBBBBBA9BBG-NPTNTTPWHOO3RRRWRQRVWUNLGREELC8GFIFF9ME8888888898769vOJ22-11111--222232223223223111137HK95AFCAGXSVWcYTHIIEUUbgMMMMCLbYXPYXb-6MRGYHQGFZWQOP7GPNBEDDI7332232367EHXzRRKE88fD6*VMKH1gekdekbEHYVhXr*8H31-21-----1-1-------7925866OKAUSOO8TKDLFJJIFHGJHHIJJFOKKO--198FD------FECDCFBGFFHGHGIFG-FIHFGGGFFGFGGFGGGGFIJJDF9A8FDFFFGFFFFFGFGFGJED9DCEG8-FCDDEEDBDEEC--3A6666678779FeDP444223121123113899AA69594MIXXaYTggbRWVdXQTSX222213312AGHGOEFFFFLMPONTOMJPJKIJK7777--x1FF88AA--------3-1-------------------------38433353333a2 ----68-------1945541231334333321233334443443331244342732334555111----2-----------1111-21-221533-434141356B-5-1------------------------------------------------4----3---------2--132H-----I1264-82-A---2 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 331 STR:RPRED 70.6 SQ:SECSTR ##########################################################################################################################################HHHHHHHHHHHHHTTccccHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcHcHHHHTcHHHHHHHHHHHHHHHHHHGGGGccTTcHHHHHHHHHHHHHHHHHTTTHHHHHHcccccTTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccTTccTTcEHHHHHHHHHHHHHcccccEEEEEEEcccTTcEEEEcHHHHHHHHHHHHHHHHHHHHHHTTTccccccEEEcccEEEEEEEEccccccGGGTTGGGcTTccccccccccccccHHHHHHHHHHHTTcEEEEEEEEEEEETTTEEEEEEEEEccTT DISOP:02AL 1-1,205-205,209-210,268-276,419-421| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccEEEEEEcccccEEccccccccccccccccccccccEEEEccccccEEEEEEEEEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEcHHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEcHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEccEEEEEEEEccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccEEEEEEccccccccccEEEEEEEEcccc //