[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rho
DDBJ      :rho          transcription termination factor Rho
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  782/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
a.140.3a.35.1b.40.4c.37.1
:421 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->419 1pvoA PDBj e-156 68.1 %
:RPS:PDB   61->419 2ck3F PDBj 7e-74 20.9 %
:RPS:SCOP  6->48 1a62A1  a.140.3.1 * 2e-13 41.9 %
:RPS:SCOP  61->128 1a62A2  b.40.4.5 * 3e-18 79.4 %
:RPS:SCOP  104->369 1bmfD3  c.37.1.11 * 5e-59 23.2 %
:RPS:SCOP  348->410 1x2lA1  a.35.1.7 * 2e-12 12.7 %
:HMM:SCOP  4->50 1a62A1 a.140.3.1 * 7.9e-11 48.9 %
:HMM:SCOP  51->128 1a62A2 b.40.4.5 * 9.1e-35 74.4 %
:HMM:SCOP  92->375 1e79A3 c.37.1.11 * 3e-77 36.2 %
:RPS:PFM   9->48 PF07498 * Rho_N 1e-05 50.0 %
:RPS:PFM   61->129 PF07497 * Rho_RNA_bind 4e-28 76.1 %
:RPS:PFM   163->366 PF00006 * ATP-synt_ab 3e-11 28.1 %
:HMM:PFM   162->367 PF00006 * ATP-synt_ab 3.9e-45 26.9 201/215  
:HMM:PFM   52->129 PF07497 * Rho_RNA_bind 1.6e-42 76.9 78/78  
:HMM:PFM   8->49 PF07498 * Rho_N 1.4e-18 50.0 42/43  
:BLT:SWISS 4->421 RHO_RHOS4 0.0 79.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88544.1 GT:GENE rho GT:PRODUCT transcription termination factor Rho GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2838347..2839612) GB:FROM 2838347 GB:TO 2839612 GB:DIRECTION - GB:GENE rho GB:PRODUCT transcription termination factor Rho GB:PROTEIN_ID AAK88544.1 GB:DB_XREF GI:15158063 GB:GENE:GENE rho LENGTH 421 SQ:AASEQ MAEMKLQELKSKSPTDLLTFAESLEVENASTMRKQELMFAILKILASQDVEIIGEGVVEVLQDGFGFLRSANANYLPGPDDIYISPSQIRRFSLKTGDTVEGPIRGPKEGERYFALLKVNTINFDDPEKIRHKVHFDNLTPLYPNERFKMELEVPTSKDLSSRVIDLVAPLGKGQRGLIVAPPRTGKTVLLQNIAHSITANHPECYLIVLLIDERPEEVTDMQRSVKGEVVSSTFDEPAVRHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIVLDRKVADKRIFPALDILKSGTRKEDLLVPRQDLQKIFVLRRILAPMGTMDAIEFLIDKLKQTKTNSDFFESMNT GT:EXON 1|1-421:0| BL:SWS:NREP 1 BL:SWS:REP 4->421|RHO_RHOS4|0.0|79.7|418/422| SEG 50->60|veiigegvvev| BL:PDB:NREP 1 BL:PDB:REP 4->419|1pvoA|e-156|68.1|407/408| RP:PDB:NREP 1 RP:PDB:REP 61->419|2ck3F|7e-74|20.9|350/466| RP:PFM:NREP 3 RP:PFM:REP 9->48|PF07498|1e-05|50.0|40/42|Rho_N| RP:PFM:REP 61->129|PF07497|4e-28|76.1|67/75|Rho_RNA_bind| RP:PFM:REP 163->366|PF00006|3e-11|28.1|199/212|ATP-synt_ab| HM:PFM:NREP 3 HM:PFM:REP 162->367|PF00006|3.9e-45|26.9|201/215|ATP-synt_ab| HM:PFM:REP 52->129|PF07497|1.6e-42|76.9|78/78|Rho_RNA_bind| HM:PFM:REP 8->49|PF07498|1.4e-18|50.0|42/43|Rho_N| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 4 RP:SCP:REP 6->48|1a62A1|2e-13|41.9|43/47|a.140.3.1| RP:SCP:REP 61->128|1a62A2|3e-18|79.4|68/78|b.40.4.5| RP:SCP:REP 104->369|1bmfD3|5e-59|23.2|259/276|c.37.1.11| RP:SCP:REP 348->410|1x2lA1|2e-12|12.7|63/87|a.35.1.7| HM:SCP:REP 4->50|1a62A1|7.9e-11|48.9|47/0|a.140.3.1|1/1|Rho termination factor, N-terminal domain| HM:SCP:REP 51->128|1a62A2|9.1e-35|74.4|78/78|b.40.4.5|1/1|Nucleic acid-binding proteins| HM:SCP:REP 92->375|1e79A3|3e-77|36.2|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1544 OP:NHOMOORG 797 OP:PATTERN -------------------------------------------------------------------- 1222211111111111111-111111111111111111112111211121121211111111212112221111111111111222221111111111111111111131222222222222222111111111113331111-12-------------------------------------11111111222222222222222222222212222222222222222222111111111111111111111----------11-----11--------------------------------------------------22222222222232322222222222111211211222222222222211323222221111224222222322322222122112-33333233332232223342222221222222232222211111111111212322222222211111111111111111111111122113331433354344423332555625233322211223223221112322223222431111111222122223122222223333222222232333331212222122222222222222222221112412222232224232423222322333321-1222211211132234242442222222-43223322224241221121113343444444444444444442122322352566666556565113111111222212524111111111112111111-1111112144342222422222343111111111222232222245222223333333411-111222222222222222222---------------------11---2122222222132 -----------------------111----------11-1-11----1-1------1-1---------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 421 STR:RPRED 100.0 SQ:SECSTR EcTTccTTcEEEETTccEEEEEEEccccEEEEEcccGGccTTcEEEEccccccEEEcTTcETTcccccEEEEEEEEEccTTEEEEEEccccTTccTTcEEEcccEEEEcGGGTTcEEcTccccccccccccEEEEcccccccGGGcccccccccccEEccccHHHHHHccEETTcEEEEEEcTTccHHHHHHHHHHHTTTTcccEEEEEEEEcccHHHHHHHHHcccEEEEEEcTTccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcTHHHHHHHHHHHHHHTccccGGGccTTHHHHHHHHHTTccccTTccEEEEEEEEcGGGcTTcHHHHHHGGGcccEEEEccHHHHHTTccccccTTccEETTccHHHHcHHHHHHHHHHHHHHHHHTTHHHHHHHcGGGccHHHHHHHHHHHH DISOP:02AL 1-2| PSIPRED cccccHHHHHcccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccEEEEEccccccccccEEEccccccccccccEEEccHHHHcccccccccEEEccccccccccccccccccccccccccHHcccccccccccccccccccEEcccccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHccccEEEEEEEEcccHHHHHHHHHHHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccccEEEEEEEEEEccccccccHHHHHHHEEEEEEEEEHHHHHccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcc //