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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ribD*
DDBJ      :ribD*        bifunctional riboflavin deaminase-reductase
Swiss-Prot:             

Homologs  Archaea  34/68 : Bacteria  751/915 : Eukaryota  34/199 : Viruses  0/175   --->[See Alignment]
c.71.1c.97.1
:414 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->238,314->377 2b3zD PDBj 4e-40 37.2 %
:RPS:PDB   7->412 2b3zA PDBj 1e-48 31.2 %
:RPS:SCOP  6->124 1wwrA1  c.97.1.2 * 1e-19 26.1 %
:RPS:SCOP  151->405 2b3zA1  c.71.1.2 * 2e-28 24.4 %
:HMM:SCOP  6->150 2b3zA2 c.97.1.2 * 4.5e-48 46.5 %
:HMM:SCOP  151->248 2hxvA1 c.71.1.2 * 4.6e-28 46.3 %
:HMM:SCOP  314->413 2aznA1 c.71.1.2 * 4.6e-15 39.0 %
:RPS:PFM   5->79 PF00383 * dCMP_cyt_deam_1 2e-06 49.3 %
:RPS:PFM   151->238,331->379 PF01872 * RibD_C 8e-17 53.4 %
:HMM:PFM   151->247 PF01872 * RibD_C 4.3e-23 46.9 96/200  
:HMM:PFM   329->391 PF01872 * RibD_C 2e-14 41.9 62/200  
:HMM:PFM   6->103 PF00383 * dCMP_cyt_deam_1 8.5e-22 42.2 90/102  
:BLT:SWISS 4->248,346->379 RIBD_AQUAE 2e-47 40.7 %
:PROS 353->371|PS00878|ODR_DC_2_1
:PROS 54->92|PS00903|CYT_DCMP_DEAMINASES
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86971.1 GT:GENE ribD* GT:PRODUCT bifunctional riboflavin deaminase-reductase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1161893..1163137 GB:FROM 1161893 GB:TO 1163137 GB:DIRECTION + GB:GENE ribD* GB:PRODUCT bifunctional riboflavin deaminase-reductase GB:PROTEIN_ID AAK86971.1 GB:DB_XREF GI:15156207 GB:GENE:GENE ribD* LENGTH 414 SQ:AASEQ MTSRADDEKFMARAIEVSLRHQGQTLTNPSVGCVLVKDGQIIAEAVTAIGGRPHAERQALEIAGEAARGATAYVTLEPCSHWGKTPPCANALVEYGVARVVVAVDDPDERVSGRGYTILRDAGIVVETGLLRDEGKRALAGYLTRQMKKRPHVILKLAVSADGMIGREGEGQVAITGAESRRVVHELRARCDGILVGIRTAIADDPELTVRIAGMERRSPVRIVLDRQFELPLMSKLVRSAREVPVIVAALPPSALPGISPSRGEIGEALSARSNFEPVSHSPAVDVGQDSAPSIPPLEGEMPGRAEGGNPNLRRQLLTDAGVQILEASTLENLLHILAESGISELLVEGGAFAAKSFLEAGLVDRIMLFESPVVIGEGGIETPLRRADITGDYALVSETAYGPDRCFDYERPI GT:EXON 1|1-414:0| BL:SWS:NREP 1 BL:SWS:REP 4->248,346->379|RIBD_AQUAE|2e-47|40.7|277/356| PROS 353->371|PS00878|ODR_DC_2_1|PDOC00685| PROS 54->92|PS00903|CYT_DCMP_DEAMINASES|PDOC00702| SEG 93->111|veygvarvvvavddpderv| BL:PDB:NREP 1 BL:PDB:REP 7->238,314->377|2b3zD|4e-40|37.2|295/360| RP:PDB:NREP 1 RP:PDB:REP 7->412|2b3zA|1e-48|31.2|352/359| RP:PFM:NREP 2 RP:PFM:REP 5->79|PF00383|2e-06|49.3|73/100|dCMP_cyt_deam_1| RP:PFM:REP 151->238,331->379|PF01872|8e-17|53.4|137/198|RibD_C| HM:PFM:NREP 3 HM:PFM:REP 151->247|PF01872|4.3e-23|46.9|96/200|RibD_C| HM:PFM:REP 329->391|PF01872|2e-14|41.9|62/200|RibD_C| HM:PFM:REP 6->103|PF00383|8.5e-22|42.2|90/102|dCMP_cyt_deam_1| GO:PFM:NREP 4 GO:PFM GO:0008270|"GO:zinc ion binding"|PF00383|IPR002125| GO:PFM GO:0016787|"GO:hydrolase activity"|PF00383|IPR002125| GO:PFM GO:0008703|"GO:5-amino-6-(5-phosphoribosylamino)uracil reductase activity"|PF01872|IPR002734| GO:PFM GO:0009231|"GO:riboflavin biosynthetic process"|PF01872|IPR002734| RP:SCP:NREP 2 RP:SCP:REP 6->124|1wwrA1|1e-19|26.1|111/151|c.97.1.2| RP:SCP:REP 151->405|2b3zA1|2e-28|24.4|201/214|c.71.1.2| HM:SCP:REP 6->150|2b3zA2|4.5e-48|46.5|142/0|c.97.1.2|1/1|Cytidine deaminase-like| HM:SCP:REP 151->248|2hxvA1|4.6e-28|46.3|95/0|c.71.1.2|1/2|Dihydrofolate reductase-like| HM:SCP:REP 314->413|2aznA1|4.6e-15|39.0|100/0|c.71.1.2|2/2|Dihydrofolate reductase-like| OP:NHOMO 868 OP:NHOMOORG 819 OP:PATTERN --------------------1--1-11111--11111111-1111111111111-1-111------11 1111-11111111111111-1-111-1111111111-1111---1-1111-111-11-1111-1111-11-1---1-----11212111111-111---1111111112111111111111111111111111111222--11111111111111111111111111112111111111111111111---1111111121311112111111211111111111------1111111111111111111111--1----1---1-11----111-1-1111-------11111111111-----------------------11-11111111111111111111-111--1111111111211111-1-11111---111111111111111111111111111111-111112111111111211111111211121121111111111111111--1-1111111111111---------------11111111111111111111121111111122221211111111111111111111111111111111111111111111111111111111111111111111111111111-11111111-1-1-------1111-11111-111211111111211111111111111-1111111-11111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111212111111111111111111111121111122221111111111111111111111111----------1-------------------------11-111-111111 --------------1-1-------------------11-1111------------1------1-----------------------------1--1------111--12-------------------------------------------------1----------------12114-11114223-22-1----- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 414 STR:RPRED 100.0 SQ:SECSTR ccHHHcHHHHHHHHHHHHGGGTTccTTccccEEEEEccccEEEEEEcccTTcccHHHHHHHHHGGGGTTcEEEEcccccccccccccHHHHHHHHTccEEEEccccccTTTTTHHHHHHHTTTcEEEEcTTHHHHHHHTHHHHHHHHHcccEEEEEEEEETTcccccTTcccTTcccHHHHHHHTTHHHHccEEEEEHHHHHHHccccccccTTccHcccEEEEEcTTccccTTcHHHHcccccEEEEEHHHHHHHHHTTcTTTTTcTTccHHHHHHHHTTTcEcTTccHHHHHHHHTTTcEEEEcccccccHHHHHTTcTTEEEEcEcccccccHHHHHTTccEEEEEEcHHHHHHHHHHTcccEEEEEEEcccccccccccccccccccccEEEEEEEEETTEEEEEEEEEE DISOP:02AL 1-2| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccEEEEEEcccccccccHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHcccccEEEEEEcccccccEEccccccEEEccHHHHHHHHHHHHHccEEEEEcHHHHHcccccEEEcccccccccEEEEEccccccccccHHccccccEEEEEccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHccHHHHHccccccccHHHHHHHccccHHHHHHcccHHHHHHHHHHccccEEEEEccHHHHHHHHHcccccEEEEEEEcEEEcccccccccHHccccccccHHHHHHHcccEEEEEEccc //