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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rnc
DDBJ      :rnc          ribonuclease III
Swiss-Prot:RNC_AGRT5    RecName: Full=Ribonuclease 3;         EC=3.1.26.3;AltName: Full=Ribonuclease III;         Short=RNase III;

Homologs  Archaea  6/68 : Bacteria  870/915 : Eukaryota  74/199 : Viruses  2/175   --->[See Alignment]
a.149.1d.50.1
:239 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->227 1yywC PDBj 7e-25 36.2 %
:RPS:PDB   3->226 3c4bA PDBj 7e-43 28.5 %
:RPS:SCOP  10->159 1o0wA1  a.149.1.1 * 2e-35 29.3 %
:RPS:SCOP  153->222 1qu6A2  d.50.1.1 * 1e-15 16.2 %
:HMM:SCOP  2->166 1o0wA1 a.149.1.1 * 2.4e-42 42.0 %
:HMM:SCOP  118->236 1whnA_ d.50.1.1 * 6.6e-23 39.8 %
:RPS:PFM   47->137 PF00636 * Ribonuclease_3 4e-14 42.9 %
:RPS:PFM   164->228 PF00035 * dsrm 2e-07 42.2 %
:HMM:PFM   47->137 PF00636 * Ribonuclease_3 1.2e-20 41.8 91/105  
:HMM:PFM   163->227 PF00035 * dsrm 7.8e-15 43.8 64/67  
:BLT:SWISS 1->239 RNC_AGRT5 e-130 100.0 %
:PROS 47->55|PS00517|RNASE_3_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86843.2 GT:GENE rnc GT:PRODUCT ribonuclease III GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1027435..1028154 GB:FROM 1027435 GB:TO 1028154 GB:DIRECTION + GB:GENE rnc GB:PRODUCT ribonuclease III GB:PROTEIN_ID AAK86843.2 GB:DB_XREF GI:159139890 GB:GENE:GENE rnc LENGTH 239 SQ:AASEQ MSKTKPLSADEISRLEALIGYEFKEKARLDRALTHASARSAAAGNYERLEFLGDRVLGLCVAELLFSTFRNASEGELSVRLNQLVSAESCAAIGDEMGLHNFIRTGSDVKKLTGKAMLNVRADVVESLIATLYLDGGLEASRKFILKYWQGRATSVDAGRRDAKTELQEWAHARFAATPAYRVDDRSGPDHDPSFTVTVEIPGVKPETGVERSKRAAEQVAATRLLEREGVWRKSPTGN GT:EXON 1|1-239:0| SW:ID RNC_AGRT5 SW:DE RecName: Full=Ribonuclease 3; EC=3.1.26.3;AltName: Full=Ribonuclease III; Short=RNase III; SW:GN Name=rnc; OrderedLocusNames=Atu1035; ORFNames=AGR_C_1906; SW:KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Nuclease;RNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->239|RNC_AGRT5|e-130|100.0|239/239| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| PROS 47->55|PS00517|RNASE_3_1|PDOC00448| SEG 36->43|asarsaaa| BL:PDB:NREP 1 BL:PDB:REP 12->227|1yywC|7e-25|36.2|207/218| RP:PDB:NREP 1 RP:PDB:REP 3->226|3c4bA|7e-43|28.5|214/238| RP:PFM:NREP 2 RP:PFM:REP 47->137|PF00636|4e-14|42.9|91/93|Ribonuclease_3| RP:PFM:REP 164->228|PF00035|2e-07|42.2|64/66|dsrm| HM:PFM:NREP 2 HM:PFM:REP 47->137|PF00636|1.2e-20|41.8|91/105|Ribonuclease_3| HM:PFM:REP 163->227|PF00035|7.8e-15|43.8|64/67|dsrm| GO:PFM:NREP 5 GO:PFM GO:0003723|"GO:RNA binding"|PF00636|IPR000999| GO:PFM GO:0004525|"GO:ribonuclease III activity"|PF00636|IPR000999| GO:PFM GO:0006396|"GO:RNA processing"|PF00636|IPR000999| GO:PFM GO:0003725|"GO:double-stranded RNA binding"|PF00035|IPR001159| GO:PFM GO:0005622|"GO:intracellular"|PF00035|IPR001159| RP:SCP:NREP 2 RP:SCP:REP 10->159|1o0wA1|2e-35|29.3|150/169|a.149.1.1| RP:SCP:REP 153->222|1qu6A2|1e-15|16.2|68/89|d.50.1.1| HM:SCP:REP 2->166|1o0wA1|2.4e-42|42.0|162/169|a.149.1.1|1/1|RNase III domain-like| HM:SCP:REP 118->236|1whnA_|6.6e-23|39.8|98/0|d.50.1.1|1/1|dsRNA-binding domain-like| OP:NHOMO 1005 OP:NHOMOORG 952 OP:PATTERN --------------------------------1-----1111----1--------------------- -11-111111111111111-1111111111111111-111111111111111111111111111-1-11111111111111111111111111111---111111111111111111111111111111111111111111111111121222111111111122--2221111111111111-----11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11--1111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111211111111111111111111111111111111-1-111111111111111111111111111111111111111111111111111111111111111111111111-11111111111--111111111111111-111111111111111111111111111--111111111111111111111111111111111111111111111111111111111111111111111--111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111-1-11111----1-1-1---1-1-1111-1111 ------1-----112--------------------------------11-------------------------------------11--1------------1------2--121211-1-1-2313-3A2-214--111-11-1111-2-13111111221111-1113121-11-------11331-31--11221 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------11--- STR:NPRED 235 STR:RPRED 98.3 SQ:SECSTR ##HHHHHTTTcHHHHHHHHTcccccHHHHHHHHccTTcTTccccccHHHHHHHHHHHHHHHHHHHHHcTTcccHHHHHHHHHHHccHHHHHHHHHHTTGGGTccccHHHHHHcccccccHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcTTTEEEcccEEcEcTTccEccTTccEEEEEEETTTEEEEEEEccHHHHHHHHHHHHHHHHTccccccc## DISOP:02AL 1-12,107-118,230-232,234-240| PSIPRED ccccccccHHHHHHHHHHHccccccHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcHHHHHHHHHHcccHHHHHccccHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHcccHHHHHHHHHHHHcccccEEEEEEEEccccccEEEEEEEEccEEEEEEEEccHHHHHHHHHHHHHHHHcccccccccc //