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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rne
DDBJ      :rne          ribonuclease E
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  710/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
b.40.4d.14.1g.3.5
:977 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->79,269->684 2vmkB PDBj 2e-87 43.6 %
:RPS:PDB   1->91 3c19A PDBj 8e-13 9.9 %
:RPS:PDB   266->650 2bvlA PDBj 1e-57 8.7 %
:RPS:SCOP  40->79,263->303 1smxA  b.40.4.5 * 7e-16 62.5 %
:RPS:SCOP  285->375 1a6fA  d.14.1.2 * 4e-22 25.3 %
:RPS:SCOP  570->608 1hykA  g.3.5.1 * 7e-04 13.5 %
:HMM:SCOP  40->304 1smxA_ b.40.4.5 * 6.8e-18 35.6 %
:RPS:PFM   40->82 PF00575 * S1 2e-09 61.0 %
:RPS:PFM   300->571 PF10150 * RNase_E_G 7e-75 55.6 %
:HMM:PFM   300->572 PF10150 * RNase_E_G 6.9e-107 49.4 271/271  
:HMM:PFM   37->80 PF00575 * S1 3.1e-08 33.3 42/74  
:HMM:PFM   582->595 PF00098 * zf-CCHC 0.00038 35.7 14/18  
:HMM:PFM   816->888 PF01456 * Mucin 0.00033 24.6 69/143  
:HMM:PFM   152->239 PF03343 * SART-1 0.00086 29.4 85/615  
:BLT:SWISS 4->79 RNE_HAEIN 1e-18 53.9 %
:BLT:SWISS 249->666 RNE_HAEIN 3e-96 45.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87130.2 GT:GENE rne GT:PRODUCT ribonuclease E GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1323801..1326734) GB:FROM 1323801 GB:TO 1326734 GB:DIRECTION - GB:GENE rne GB:PRODUCT ribonuclease E GB:PROTEIN_ID AAK87130.2 GB:DB_XREF GI:159140007 GB:GENE:GENE rne LENGTH 977 SQ:AASEQ MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGGNRHGFLAFAEIHPDYYQIPLADRQALLKAEAEDHRRSDDFESADAPESGAPMIDLSQVDQPDVGIVAASETTDVAVTEEVAPVSEAVSEETAVEVVAEEAPAEEEKPKKRVRRPRAKKKTAEEIAAEAAEASSEDDGSTGGDMAAMVDTDTISEEVEGLRRGNDDDDDDDDDDHHEKEVIESVGAEDAMEEVPDRVARKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETALYLLNHKRGSIVDYEGRFGVAIIIAADSSVGAQHFAIDRGEAVENPVKIESLIQMLPSFVEEEDDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRRRRGKGGQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANEAANADEDGKRKRRRRGKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEGVVADVVAEEAPKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIEPVVVEATVVDVAIEEVGEASAGLAPGADVPGTEEKTRANRGSNVSSSEPVVTSSGSPASNPDGDEPKPRKGGWWQRKGFF GT:EXON 1|1-977:0| BL:SWS:NREP 2 BL:SWS:REP 4->79|RNE_HAEIN|1e-18|53.9|76/935| BL:SWS:REP 249->666|RNE_HAEIN|3e-96|45.5|415/935| SEG 137->197|vavteevapvseavseetavevvaeeapaeeekpkkrvrrprakkktaeeiaaeaaeasse| SEG 227->236|dddddddddd| SEG 687->707|veeeddivieveedeeeeeiv| SEG 726->741|gkrkrkrrrrrrgkgg| SEG 754->777|gndaedddaegdddgvetdeagad| SEG 779->831|denganeaanadedgkrkrrrrgkrggrrnrddaldaagadgetegegaegee| SEG 834->913|taapvteepataaevvegvvadvvaeeapkkprrtrkaktkteteteeapkaetvetvepviiepvvveatvvdvaieev| SEG 939->953|snvsssepvvtssgs| BL:PDB:NREP 1 BL:PDB:REP 4->79,269->684|2vmkB|2e-87|43.6|476/495| RP:PDB:NREP 2 RP:PDB:REP 1->91|3c19A|8e-13|9.9|91/177| RP:PDB:REP 266->650|2bvlA|1e-57|8.7|381/543| RP:PFM:NREP 2 RP:PFM:REP 40->82|PF00575|2e-09|61.0|41/74|S1| RP:PFM:REP 300->571|PF10150|7e-75|55.6|270/271|RNase_E_G| HM:PFM:NREP 5 HM:PFM:REP 300->572|PF10150|6.9e-107|49.4|271/271|RNase_E_G| HM:PFM:REP 37->80|PF00575|3.1e-08|33.3|42/74|S1| HM:PFM:REP 582->595|PF00098|0.00038|35.7|14/18|zf-CCHC| HM:PFM:REP 816->888|PF01456|0.00033|24.6|69/143|Mucin| HM:PFM:REP 152->239|PF03343|0.00086|29.4|85/615|SART-1| GO:PFM:NREP 1 GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 3 RP:SCP:REP 40->79,263->303|1smxA|7e-16|62.5|81/87|b.40.4.5| RP:SCP:REP 285->375|1a6fA|4e-22|25.3|91/113|d.14.1.2| RP:SCP:REP 570->608|1hykA|7e-04|13.5|37/46|g.3.5.1| HM:SCP:REP 40->304|1smxA_|6.8e-18|35.6|87/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1030 OP:NHOMOORG 724 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-1111111111111111111111111111111111111111111111111111111111-----11111111111111--1111111111111111111111111111111111111----------1111111111111111111111111111111111111-------1---11111111111111111----111-----1111111111------------------------------------------------------------------------------------------11111111111111111111111111--111111111111-111111-1-1111111-1111111111111111111111111111-1111111111211111111111111122212111111221111111111112121111111111111111111111111111111111112222222232222222222222222222222221222222222222222222222222222222222222212222111111111122222222211111112-------------------------222222222222222222222222222222221-2222211-11122222222222222222-222222222222212222222222222222222222222222222222222212222222222221122111111111212222222222222122222222222222222222222222222222222222222222222222222222222222222222222111-------------------------------------------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2------1-------11222--1111-41------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 535 STR:RPRED 54.8 SQ:SECSTR HHEEEEEEcccTTcEEEEEEETTEEEEEEEEcccccccTTcEEEEEEEEEETTTTEEEEEccccccEEEEGGGccGGGcccHHHHHHHHHHcccEEEEcTTc#####################################################################################################################################################cEEEGGGTEEEEEcccccHHHHHHHTccTTccccHHHHHHHHHHHHHTTcTTccHHHHHHHHHHHHHHHHcTTcTTHHHHHHHHHHHccEEcccEEEEEcccccccHHHHHHHHHHHHHcTTcEEEEEEcTTcTTHHHHHHHHHHHHHHHHHHHHGGGGTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcTccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHTTTEEEGGGcHHHHTcHHHHHHTcccHHHHHHHHHHHHHHHHcEEEEEcTTcEEcccTTTTTTccccTTccHHHHHHHHHHHHHHHHcccTTcccTccHTGGGccHHHHHHHHHHHHTcccGGGTccccccccTTccEEEEETTEEEEEEEEEcTTcHHHHHHHHHHHHHHHHHEEEETTccTTccEEEEEEcccccccccccGGGcc##################################################################################################################################################################################################################################################################################################### DISOP:02AL 1-1,89-115,152-178,247-270,666-970| PSIPRED cccEEEEEcccccEEEEEEEEccEEEEEEEccccccEEcccEEEEEEEEEcccccEEEEEEcccccEEEEHHHHcHHHHcccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccHHHHHHHHHHHcccccccccccccHHHcccccccccHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHccccEEEEEEEEccccccccccEEEEEEcccEEEEccccccEEEEEEEcccHHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHcHHHHHHHHHccEEEcccccEEEEEccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHHHcccccEEcccccccEEEEEEccccccHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHccccHHHHHHHHHHccEEEEEEccccccccEEEEEccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //