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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rnhB
DDBJ      :rnhB         ribonuclease HII
Swiss-Prot:RNH2_AGRT5   RecName: Full=Ribonuclease HII;         Short=RNase HII;         EC=3.1.26.4;

Homologs  Archaea  0/68 : Bacteria  806/915 : Eukaryota  18/199 : Viruses  1/175   --->[See Alignment]
c.55.3
:217 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->214 2etjA PDBj 3e-14 37.1 %
:RPS:PDB   35->216 2dffA PDBj 1e-38 25.3 %
:RPS:SCOP  27->216 2etjA1  c.55.3.1 * 2e-42 31.2 %
:HMM:SCOP  23->216 2etjA1 c.55.3.1 * 2.1e-64 50.0 %
:RPS:PFM   37->213 PF01351 * RNase_HII 2e-22 40.9 %
:HMM:PFM   37->213 PF01351 * RNase_HII 6.8e-47 36.9 176/198  
:BLT:SWISS 1->217 RNH2_AGRT5 e-105 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86530.2 GT:GENE rnhB GT:PRODUCT ribonuclease HII GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(719744..720397) GB:FROM 719744 GB:TO 720397 GB:DIRECTION - GB:GENE rnhB GB:PRODUCT ribonuclease HII GB:PROTEIN_ID AAK86530.2 GB:DB_XREF GI:159139748 GB:GENE:GENE rnhB LENGTH 217 SQ:AASEQ MKRTATPDSPALFDLVDTGPDFAFELEAKKKGFWPVAGTDEAGRGPLAGPVVAAAVILDPDNIPKGMDDSKKLTRQKRESLFVQIMETSIVSVASSGPGLIDSVNILRASLDAMRRAVLGLEIPPALVLADGRDRPPGIPCEAKAVIKGDSRSLSIAAASIIAKVTRDRMMERAGVVHTSYGFEGHAGYGTPAHLRAIESHGPCALHRMSFRPLKRD GT:EXON 1|1-217:0| SW:ID RNH2_AGRT5 SW:DE RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; SW:GN Name=rnhB; OrderedLocusNames=Atu0720; ORFNames=AGR_C_1307; SW:KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Manganese;Metal-binding; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->217|RNH2_AGRT5|e-105|100.0|217/217| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| SEG 42->56|agrgplagpvvaaav| SEG 151->163|srslsiaaasiia| BL:PDB:NREP 1 BL:PDB:REP 27->214|2etjA|3e-14|37.1|170/206| RP:PDB:NREP 1 RP:PDB:REP 35->216|2dffA|1e-38|25.3|182/210| RP:PFM:NREP 1 RP:PFM:REP 37->213|PF01351|2e-22|40.9|176/190|RNase_HII| HM:PFM:NREP 1 HM:PFM:REP 37->213|PF01351|6.8e-47|36.9|176/198|RNase_HII| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01351|IPR001352| GO:PFM GO:0004523|"GO:ribonuclease H activity"|PF01351|IPR001352| RP:SCP:NREP 1 RP:SCP:REP 27->216|2etjA1|2e-42|31.2|176/211|c.55.3.1| HM:SCP:REP 23->216|2etjA1|2.1e-64|50.0|190/0|c.55.3.1|1/1|Ribonuclease H-like| OP:NHOMO 846 OP:NHOMOORG 825 OP:PATTERN -------------------------------------------------------------------- 111-111111111111111-1111111111111111111111111----11----------1111111111-------11--11-11-1111-1112--11-1111111111111111111111111111111111111111111111111111111111111111111111111---1-11-1-1--11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-------1-111111111-11112-1111111111111111111111-111111111111111111111111111111111-11112111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111-111111111111111-1211111-----1---------11-1111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111-1-111111111211111111111111111111111111111111111111111111111--11--11--1111-1111-1----1-1-1--------11------1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------5----1111A1111-1-----1211111- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-- STR:NPRED 195 STR:RPRED 89.9 SQ:SECSTR #####################HHHHHccEEEEEEEEEEEEEEccccccccEEEEEEEEETTTHHHTGGGGccccHHHHHHHHHHHHTTccEEEEEEcHHHHTTccHHHHHHHHHHHHHTTccccccEEEEEEccccHccccEEEEEETcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccTTccTTcHHHHHHHHHHHTccccTTccTTcTHHHH# DISOP:02AL 1-12,217-218| PSIPRED ccccccccccccccccccccccHHHHHHHHccccEEEEEEccccccccccEEEEEEEEcHHHccccccHHHcccHHHHHHHHHHHHHHccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccEEEccccccccc //