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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rnr
DDBJ      :rnr          exoribonuclease
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  771/915 : Eukaryota  196/199 : Viruses  0/175   --->[See Alignment]
a.4.5b.40.4
:784 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   288->735 2ix0A PDBj 4e-40 32.4 %
:RPS:PDB   210->750 3bzcA PDBj 5e-55 11.0 %
:RPS:SCOP  42->89 1fp2A1  a.4.5.29 * 2e-04 12.5 %
:RPS:SCOP  182->266 2id0A2  b.40.4.5 * 2e-09 9.5 %
:RPS:SCOP  269->661 2vnuD4  b.40.4.16 * e-103 29.0 %
:RPS:SCOP  678->749 2id0A1  b.40.4.5 * 2e-09 20.8 %
:HMM:SCOP  664->753 1go3E1 b.40.4.5 * 4.9e-17 37.5 %
:RPS:PFM   288->618 PF00773 * RNB 7e-72 47.8 %
:HMM:PFM   288->614 PF00773 * RNB 7.4e-90 40.5 311/326  
:HMM:PFM   665->733 PF00575 * S1 1e-11 40.4 57/74  
:BLT:SWISS 36->754 RNR_VIBCH 5e-94 34.3 %
:PROS 586->610|PS01175|RIBONUCLEASE_II
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87094.1 GT:GENE rnr GT:PRODUCT exoribonuclease GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1291692..1294046) GB:FROM 1291692 GB:TO 1294046 GB:DIRECTION - GB:GENE rnr GB:PRODUCT exoribonuclease GB:PROTEIN_ID AAK87094.1 GB:DB_XREF GI:15156354 GB:GENE:GENE rnr LENGTH 784 SQ:AASEQ MSKAPRQRQGSASDGFGRTGRGKRVSEGEGIIHGEVPSREVLLKFIADHPQQASKREIAKAFGLKGENRIVLKALLKELEVDGMVHKSRKSLTRPGGLPPVTVLDITTRDKDGELIGRPAEWPEDMGAAPAVLIRQSSQDRGKKAPAAGLGDRILAKIFPSKDTVGPAYTARVVKLIDRRQNALLGVFKQTEGGGGRLMPIDRRGEEMVIDPDGVGDAKDGDLIEVETSRNSGRYGLTRAKVLSVVGSVASEKAISMIAIYAHGIPHIFPPNVLAEADAAKAATMSHREDWRDLPLITIDPADAKDHDDAVYAELDPSPDNPDGVIVTVAIADVSWYVRPGAPLDREALKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPALAVRMTFSKEGRKASHTFHRIMMKSAAKLSYQQAQAAIDGNPDDKTGTLLEPILKPLWHAYEVMKRGRDRRQPLELDMPERKIQLRPDGTVDKVVIPERLDAHKLIEEMMIQANVAAAETLETKKQRLVYRVHDAPTLSKQEVLREFLGTIGISMAKGVAMRANSFNGILARALDTPHQIMVNEMVLRSQSQAIYSPENIGHFGLNLMKYAHFTSPIRRYADLIVHRALVGSLGLGEGGITPQEEATLDDIAAEISTFERRAMAAERDTVNRLIAHHLSERVGEEFEGRVGGVTKAGLFVALPQFGADGFVPISTLGTDYFFYDEAHQALTGEKTGLGYQLGDTVQVRLAEAVPLAGALRFEMLSPGRKMPVGSRSFHKAGRRTSRPGAKPGTRPPRGRR GT:EXON 1|1-784:0| BL:SWS:NREP 1 BL:SWS:REP 36->754|RNR_VIBCH|5e-94|34.3|699/821| PROS 586->610|PS01175|RIBONUCLEASE_II|PDOC00904| SEG 664->677|ervgeefegrvggv| BL:PDB:NREP 1 BL:PDB:REP 288->735|2ix0A|4e-40|32.4|429/637| RP:PDB:NREP 1 RP:PDB:REP 210->750|3bzcA|5e-55|11.0|528/730| RP:PFM:NREP 1 RP:PFM:REP 288->618|PF00773|7e-72|47.8|318/327|RNB| HM:PFM:NREP 2 HM:PFM:REP 288->614|PF00773|7.4e-90|40.5|311/326|RNB| HM:PFM:REP 665->733|PF00575|1e-11|40.4|57/74|S1| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00773|IPR001900| GO:PFM GO:0004540|"GO:ribonuclease activity"|PF00773|IPR001900| RP:SCP:NREP 4 RP:SCP:REP 42->89|1fp2A1|2e-04|12.5|48/101|a.4.5.29| RP:SCP:REP 182->266|2id0A2|2e-09|9.5|84/90|b.40.4.5| RP:SCP:REP 269->661|2vnuD4|e-103|29.0|386/416|b.40.4.16| RP:SCP:REP 678->749|2id0A1|2e-09|20.8|72/87|b.40.4.5| HM:SCP:REP 664->753|1go3E1|4.9e-17|37.5|88/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1568 OP:NHOMOORG 980 OP:PATTERN ------------------------11111111-----------11-11----1--------------- 212-11-11111--1---------------------1121-----111----111111----1---11----------1-11111111111111111--1111111111111111111111111222111111111----------723322122221-111-21-12212-1-----1--1-12222---1111111111111111111111111111111111111111111111111111111111111111111111111111111111111222111111111111111111111111111111111111111111111111111111111111111111111111111-1-----111111111-11-11111111111111111111111111111111111-11112111121-11111111111111111111111111111111111111-1111------------------------------1211111111111111111111111111111111111111111111111222-11111111111111111111111111122222222212111111111111122-11111111111111111111111111112221221122211111111111111111112-1111-21122222222222222222222-2222222222222222222222222222222222222222222222222222-222222222222--2111111111111321222222222122222111111111112111111111111111111111111111222222222132221111111111111112-2111111--------1-1----1-11111111111111111111111111111-11 2211442-722222322222332222322222212222222222222222222221222111222121-2112122121122222222-22222222222222886133595533594232344D9173DT537562322443342332444354444422234522422222322133J4443433252243233441 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 559 STR:RPRED 71.3 SQ:SECSTR ####################################################################################################################################################################################################TTccGGGT####cccccccccHHHHHHHHHHHTTcHHHHHHHHHHHHHHcEEEEEEcGGGcGGGGGGGGGcEEEEEGGGccHHHHHHHHTccccccEEEEEEcccccTTcccHHHHHHHHccccccHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHTccccccccEEEEEccccccEEEEEEcTTccEccGGGccHHHHHHHHHHHHHHHTccEEEEEcHHcGGGccEEEEEHccHHHHHHHHcHHHHHHcTTccHHHHHHHHHHHHHHcHHHHHTTccGGGGTccTTGGGccHHHHHHHHHHHHHHHHHHHcEETTTccHHHHHTcTTccHHHHHHHccccGGGGGGcTTccHHHHHHHGGGEEcTTcccGGGGccccGGGHHHHHHHHHHHTccHHHHTTcHHHHHHccGGGTccccccHHHHHHHHHHHcTTccccccccTTTTcccccccTTccTTcccccEEEEEETTEEEEEccccccEEEEETTTccccccEEETTTTEEEEccHHHHccTTccccccEEEEETTTTEEEEccccccTTcEEGGG######################### DISOP:02AL 1-32, 161-170, 745-784| PSIPRED cccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHHccccccHHHHHHHHccccHHHHHHHHHHHHHHHccEEEEEcccEEccccccEEEEEEEEEEcccEEEEEEEEcccccccccccEEccccccccHHHHcccccccEEEEEEEEccccccccccEEEEEEEEccccEEEEEEEEEcccEEEEEEEcccccEEEEcHHHHcccccccEEEEEEEEcccccccccEEEEEEEcccccccHHHHHHHHHccccccccHHHHHHHHHcccHHHHccccccccEEEEEccccccccccEEEEEEccccccccEEEEEEEEccHHHHcccccHHHHHHHHcccEEEEcccccccccHHHHHHHHHcccccEEEEEEEEEEEcccccEEEEEEEEEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccccccHHccccccccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEccccEEEEEcccccEEEEccccccccEEEcccccEEEEccccEEEEEccEEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccccccccc //