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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rns
DDBJ      :rns          ribonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  105/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
d.124.1
:252 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   66->234 1jy5A PDBj 1e-11 25.9 %
:RPS:PDB   66->244 1bk7A PDBj 1e-31 26.3 %
:RPS:SCOP  66->244 1bk7A  d.124.1.1 * 3e-33 26.3 %
:HMM:SCOP  63->252 1jy5A_ d.124.1.1 * 2.2e-43 32.1 %
:RPS:PFM   68->229 PF00445 * Ribonuclease_T2 1e-18 39.2 %
:HMM:PFM   66->235 PF00445 * Ribonuclease_T2 1.1e-43 37.7 162/189  
:BLT:SWISS 66->227 RNI_AERHY 5e-23 40.5 %
:PROS 100->107|PS00530|RNASE_T2_1
:PROS 142->153|PS00531|RNASE_T2_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86936.2 GT:GENE rns GT:PRODUCT ribonuclease GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1122005..1122763) GB:FROM 1122005 GB:TO 1122763 GB:DIRECTION - GB:GENE rns GB:PRODUCT ribonuclease GB:PROTEIN_ID AAK86936.2 GB:DB_XREF GI:159139927 GB:GENE:GENE rns LENGTH 252 SQ:AASEQ MKRYAGFIALGLLSLAALWFAQEKPVSKGPENDRQTPAQQQSAARPQQNTARQNADNAQPPRGTGFDFYVLSLSWSPAFCASSEGSGNRQQCGSDRRYGFVVHGLWPQNENGYPEFCQSSEPERVPDAIGRSMFDIMPSMGLIGHQWRKHGACSGLSQKDYFAATRAAFDAIRLPGKISSGAQTNTLSADAIETAFTDANPGLSKRAVSISCDGRRLEEVRICLNKDMAFRDCPELDRKGCRASATEIIPIR GT:EXON 1|1-252:0| BL:SWS:NREP 1 BL:SWS:REP 66->227|RNI_AERHY|5e-23|40.5|153/215| PROS 100->107|PS00530|RNASE_T2_1|PDOC00459| PROS 142->153|PS00531|RNASE_T2_2|PDOC00459| SEG 34->48|rqtpaqqqsaarpqq| BL:PDB:NREP 1 BL:PDB:REP 66->234|1jy5A|1e-11|25.9|162/203| RP:PDB:NREP 1 RP:PDB:REP 66->244|1bk7A|1e-31|26.3|171/190| RP:PFM:NREP 1 RP:PFM:REP 68->229|PF00445|1e-18|39.2|153/176|Ribonuclease_T2| HM:PFM:NREP 1 HM:PFM:REP 66->235|PF00445|1.1e-43|37.7|162/189|Ribonuclease_T2| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF00445|IPR001568| GO:PFM GO:0033897|"GO:ribonuclease T2 activity"|PF00445|IPR001568| RP:SCP:NREP 1 RP:SCP:REP 66->244|1bk7A|3e-33|26.3|171/190|d.124.1.1| HM:SCP:REP 63->252|1jy5A_|2.2e-43|32.1|184/207|d.124.1.1|1/1|Ribonuclease Rh-like| OP:NHOMO 123 OP:NHOMOORG 120 OP:PATTERN -------------------------------------------------------------------- --1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111------111111111111111111111111-1111111111--1111111--11111---1111111111-------------1--------------------------------11111------1111------11---------1------------1-----------1-----------------------------------------------------------------------------11---------11-1------------1-----------------11--------------------------------------111--------------------------------------------------------111111111111--1--------1----1--1111---------------------------------------------------------------------------------------------------------- ----2-------------------------------------------------------------------------------------------------------1----------------------------------------------------1---------11---1------112----12-1111-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 193 STR:RPRED 76.6 SQ:SECSTR #########################################################ccccccccccEEEEEEEcHHHHHHTccccEcccccGGGGccccEEEEEEEEcccccccccccccccGGGGGGGHHHHHHHcHHHHHHHHHHHTGGGGTccHHHHHHHHHHHHHTccHHHHHGGGTcccEEEHHHHHHHHHccccEEcEEEEcTTTccEEEEEEEEEEETTccEEccccccccccccEcccccc## DISOP:02AL 1-2,31-57,237-240| PSIPRED ccHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccccccccHHHHHccccccccccccccEEEEEEEcccccEEccccccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHcHHHHHccccccccccHHHHHHHHHHHcccccccccEEEccccEEEEEEEEEcccccEEEccccccccccccccEEcccc //