[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rpe
DDBJ      :rpe          ribulose-phosphate 3-epimerase
Swiss-Prot:             

Homologs  Archaea  14/68 : Bacteria  875/915 : Eukaryota  188/199 : Viruses  0/175   --->[See Alignment]
c.1.2c.55.3
:225 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->175 2fliL PDBj 4e-50 50.9 %
:RPS:PDB   1->165 3bq6A PDBj 2e-26 17.6 %
:RPS:SCOP  5->171 1xhxA1  c.55.3.5 * 2e-37 11.2 %
:HMM:SCOP  4->221 2fliA1 c.1.2.2 * 7.9e-73 48.4 %
:RPS:PFM   7->175 PF00834 * Ribul_P_3_epim 2e-62 63.9 %
:HMM:PFM   6->202 PF00834 * Ribul_P_3_epim 9.5e-87 54.8 197/201  
:BLT:SWISS 5->207 RPE_RHOCA 1e-58 50.5 %
:PROS 1->94|PS00430|TONB_DEPENDENT_REC_1
:PROS 34->48|PS01085|RIBUL_P_3_EPIMER_1
:PROS 136->158|PS01086|RIBUL_P_3_EPIMER_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87607.1 GT:GENE rpe GT:PRODUCT ribulose-phosphate 3-epimerase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1821390..1822067 GB:FROM 1821390 GB:TO 1822067 GB:DIRECTION + GB:GENE rpe GB:PRODUCT ribulose-phosphate 3-epimerase GB:PROTEIN_ID AAK87607.1 GB:DB_XREF GI:15156953 GB:GENE:GENE rpe LENGTH 225 SQ:AASEQ MSLPIRIAPSILAANFAKLGQEVADVTEAGADWIHLDVMDGHFVPNISFGPDVIKALRPHSMAFFDCHLMIEPVDPYLEAFAKAGCDSITVHAEAGPHLHRSLQTIRGLGRKAGVTLNPATPLSVIENVLDDVDLILIMSVNPGFGGQKFIPAMLDKIRAAKAMIGDRPIDLEVDGGVTAETAGAIIAAGANALVAGSAVFKGDGVADYRKTVAQLRMAAEAGRT GT:EXON 1|1-225:0| BL:SWS:NREP 1 BL:SWS:REP 5->207|RPE_RHOCA|1e-58|50.5|202/228| PROS 1->94|PS00430|TONB_DEPENDENT_REC_1|PDOC00354| PROS 34->48|PS01085|RIBUL_P_3_EPIMER_1|PDOC00833| PROS 136->158|PS01086|RIBUL_P_3_EPIMER_2|PDOC00833| SEG 176->199|ggvtaetagaiiaaganalvagsa| BL:PDB:NREP 1 BL:PDB:REP 5->175|2fliL|4e-50|50.9|171/218| RP:PDB:NREP 1 RP:PDB:REP 1->165|3bq6A|2e-26|17.6|165/716| RP:PFM:NREP 1 RP:PFM:REP 7->175|PF00834|2e-62|63.9|169/201|Ribul_P_3_epim| HM:PFM:NREP 1 HM:PFM:REP 6->202|PF00834|9.5e-87|54.8|197/201|Ribul_P_3_epim| GO:PFM:NREP 2 GO:PFM GO:0004750|"GO:ribulose-phosphate 3-epimerase activity"|PF00834|IPR000056| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00834|IPR000056| RP:SCP:NREP 1 RP:SCP:REP 5->171|1xhxA1|2e-37|11.2|160/183|c.55.3.5| HM:SCP:REP 4->221|2fliA1|7.9e-73|48.4|215/0|c.1.2.2|1/1|Ribulose-phoshate binding barrel| OP:NHOMO 1383 OP:NHOMOORG 1077 OP:PATTERN -----------------------------1-----11111111------------------111--11 1111111111111111111-1111111111111111111111221111111111111111111111111111111111111111111111111211---1111111111111111111111111111111111111111111121111111111111111211111111111111111111111111111111111111111111111111112111111111115556541111111111111111111111111112111111111211211111221211111111211112212121111111111111111111111211114111111111113111111111112211121111111111121111111111111111112121111111211111111111-11111111121131111112222211111111111111111111111211111211111111111---------------1111111111111111111111111111111111111122132111112211112112111111111111111111111111111111111111111111111111111111111-1111111111111111111111111131111111111111111111111111111-1111111111121111113112322211-1332222121132333332313111113133333344333333111111111111111111111111111111111111111111111111121123111111111111111111111111111111111111111111111111111211111111111111111111111111--------111----2-112111-111121111---1111111111221 11--11--52111111111111111111111111111111111111111111111111111111111111111-11111111111111-11111121-111111111161221111221211123312-GH3-321212321212221111222-111222412111111-11113213a3433142531523222134 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 221 STR:RPRED 98.2 SQ:SECSTR cEEcccccHHHHHHHHHHHHHHHHHHHHTTccEEEEEHHHHTccccGGGHHHHHHHTcccTTcEEEEEccccccTTTHHHHTTccccEEEEccTTTTGGGHHHHTcTTcccEEEcccTTccccccHHHHHHHHHHHTGEEEEcccccTTccHHHHHHHHHHHHHHTTHHHTTccccccGGGGHHHHHHHHHHHHHHTccEETccEEccHHHHHHHHHHHHH#### DISOP:02AL 1-4, 222-225| PSIPRED cccccEEEHHHHHHcHHHHHHHHHHHHHccccEEEEEEEccEEcccccccHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHccEEEEEEEccccccccccHHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccc //