[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : rsmC
DDBJ      :rsmC         ribosomal RNA small subunit methyltransferase
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  255/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.66.1
:338 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   169->336 2pjdA PDBj 3e-20 38.9 %
:RPS:PDB   172->310 3eeyB PDBj 2e-15 14.6 %
:RPS:SCOP  17->132 1f38A  c.66.1.22 * 6e-04 17.6 %
:RPS:SCOP  179->327 1aqiA1  c.66.1.27 * 6e-13 14.9 %
:HMM:SCOP  160->333 1t43A_ c.66.1.30 * 1.3e-24 27.3 %
:RPS:PFM   185->306 PF05175 * MTS 5e-08 34.2 %
:HMM:PFM   164->334 PF05175 * MTS 2.8e-56 39.3 168/170  
:BLT:SWISS 74->335 RSMC_PSYIN 8e-24 30.0 %
:PROS 266->272|PS00092|N6_MTASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85902.2 GT:GENE rsmC GT:PRODUCT ribosomal RNA small subunit methyltransferase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(83313..84329) GB:FROM 83313 GB:TO 84329 GB:DIRECTION - GB:GENE rsmC GB:PRODUCT ribosomal RNA small subunit methyltransferase GB:PROTEIN_ID AAK85902.2 GB:DB_XREF GI:159139487 GB:GENE:GENE rsmC LENGTH 338 SQ:AASEQ MSRDAVKTLFHPFASDMLAMPKEGERVLFLGAEAGPRLDGFDAEIVAVQHLRPLYRALEAQGTGVAPDVSGEDYDAALLLCGKHRGENENRVAEALSRVKAGGLIVAAGSKEDGIVTLRKTLSKLGIESESTPKYHGVAIWFKRPEDVSAAVLKLAQKPATVEGRFTALPGMFSHDRVDDGSELLASRLPTDFDGNAADFGAGWGYLSIMLAEKSPRTARIDLFEADWNALEFAKTNLLENNPRLTARFFWQDLANEPPKEKYDLIIMNPPFHAAGQAAEPALGQAFIKAAAGALRSGGKLLMVANRGLPYEPVLAAEFRTTAEVCRNARFKILSAQK GT:EXON 1|1-338:0| BL:SWS:NREP 1 BL:SWS:REP 74->335|RSMC_PSYIN|8e-24|30.0|257/349| PROS 266->272|PS00092|N6_MTASE|PDOC00087| BL:PDB:NREP 1 BL:PDB:REP 169->336|2pjdA|3e-20|38.9|162/329| RP:PDB:NREP 1 RP:PDB:REP 172->310|3eeyB|2e-15|14.6|137/192| RP:PFM:NREP 1 RP:PFM:REP 185->306|PF05175|5e-08|34.2|120/154|MTS| HM:PFM:NREP 1 HM:PFM:REP 164->334|PF05175|2.8e-56|39.3|168/170|MTS| GO:PFM:NREP 1 GO:PFM GO:0008168|"GO:methyltransferase activity"|PF05175|IPR007848| RP:SCP:NREP 2 RP:SCP:REP 17->132|1f38A|6e-04|17.6|116/186|c.66.1.22| RP:SCP:REP 179->327|1aqiA1|6e-13|14.9|148/212|c.66.1.27| HM:SCP:REP 160->333|1t43A_|1.3e-24|27.3|161/0|c.66.1.30|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 395 OP:NHOMOORG 259 OP:PATTERN ---1-1-----------------------------------------------------1-------- ----------------------------------------------1-1-----1--------1---1-1--------------------------------------------------------------------------1--------------------------------------111-1-------------------------------------------------------------------------------------11-----------------------------------------111------------------------------------------------------1--111111111-1------------2122-1-111-1111111111--111111111111--11-1111111111-------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------122121211222222222222222222222-------11-11121222222222222222-2222222222222222222222221112222222222222222222222221-222222222222--1-----------21-1111111111111--1-111111---1122222212222222222----------222222222222221111111111------2----------------------------------------------1---1----- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 338 STR:RPRED 100.0 SQ:SECSTR HHHHHHHHHHTccccEEEccccccEEEcccTTccTTGGGcTTcEEEEEEccHHHHHHHHHTTcccGGGccTTcEEEEEEEccGGGcHHHHHHHHHHHHEEEEEEEEEEEEGGGTHHHHHHHHHHHHccEEEEEEETTEEEEEEEccccccccccccEEEEEEEEEEEEETTcccccHHHHHHHHHHHHHHccTTcEEEEcccTTcHHHHHHHHHHcTTcEEEEEEccHHHHHHHHHHHHHTTcGGGEEEEEccGGGGGccccEEEEEEEEcccTTccTTccccHHHHHHHHHHHHHEEEEEEEEEcccHHHHHHHHHHHcccEEEEEETTEEEEEEEc DISOP:02AL 1-2| PSIPRED ccHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccEEEEEcccHHHHHHHHHccccccccccccccEEEEEccccHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccHHHccccccccccEEEEcccEEccccccHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEEEcccccccccccEEEEEEcccHHHHHHHccHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHHHEEEEEEcccEEEEEEEc //