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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : sdhA
DDBJ      :sdhA         succinate dehydrogenase flavoprotein subunit
Swiss-Prot:             

Homologs  Archaea  59/68 : Bacteria  794/915 : Eukaryota  186/199 : Viruses  0/175   --->[See Alignment]
a.7.3c.3.1d.168.1
:613 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->613 1zoyA PDBj 0.0 62.5 %
:RPS:PDB   18->613 2bs2A PDBj 1e-89 32.3 %
:RPS:SCOP  22->302 1e7pA2  c.3.1.4 * 2e-81 34.8 %
:RPS:SCOP  250->368 3cirM3  d.168.1.1 * 2e-19 55.6 %
:RPS:SCOP  464->597 1kf6A1  a.7.3.1 * 9e-45 36.6 %
:HMM:SCOP  1->456 1jnrA2 c.3.1.4 * 7.5e-81 39.4 %
:HMM:SCOP  464->613 2bs2A1 a.7.3.1 * 3.5e-50 44.2 %
:RPS:PFM   22->418 PF00890 * FAD_binding_2 5e-90 55.3 %
:RPS:PFM   475->591 PF02910 * Succ_DH_flav_C 1e-24 48.2 %
:HMM:PFM   22->418 PF00890 * FAD_binding_2 4.2e-125 46.6 373/421  
:HMM:PFM   473->613 PF02910 * Succ_DH_flav_C 1.7e-46 52.7 129/129  
:BLT:SWISS 13->613 DHSA_PARDE 0.0 76.8 %
:PROS 56->65|PS00504|FRD_SDH_FAD_BINDING
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88365.1 GT:GENE sdhA GT:PRODUCT succinate dehydrogenase flavoprotein subunit GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2628735..2630576) GB:FROM 2628735 GB:TO 2630576 GB:DIRECTION - GB:GENE sdhA GB:PRODUCT succinate dehydrogenase flavoprotein subunit GB:PROTEIN_ID AAK88365.1 GB:DB_XREF GI:15157850 GB:GENE:GENE sdhA LENGTH 613 SQ:AASEQ MASISSPSQNGKAYTYVDHSYDVIVVGAGGAGLRATLGMAEQGFRTACITKVFPTRSHTVAAQGGIAASLTNMTPDCWQWHLYDTVKGSDWLGDVDAMQYLAMEAPKAVYELEHYGVPFSRNAEGKIYQRPFGGHMQNYGEGPPVQRTCAAADRTGHAILHTLYGQSLRNNAEFFIEYFALDLIMAPDGRCTGVVAWNLDDGTIHRFSAKMVVLATGGYGRAYFSATSAHTCTGDGGGMIARAGLPLQDMEFVQFHPTGIYGAGCLITEGARGEGGYLVNSEGERFMERYAPSAKDLASRDVVSRCMTMEIREGRGVGKNKDHIFLHLDHLDPAILHERLPGISESAKIFAGVDVTREPIPVLPTVHYNMGGIPTNYWGEVLNADANNPERIAPGLMAVGEAGCASVHGANRLGSNSLIDLVVFGRAAAIRAAQVIDRDAPVPALDIAACDKIMERFDSLRYANGSTPTAVLRDKMQRAMQDDAAVFRTQESLESGCQRLSAIWKELPDVKVTDRSMVWNSDLVETLELHNLMANAITTVYGAEARKESRGSHAREDFVDGPFGGRDDVNWRKHTLAWVSPEGDVKLDYRPVHTDLIADGIDPKKIEPKARVY GT:EXON 1|1-613:0| BL:SWS:NREP 1 BL:SWS:REP 13->613|DHSA_PARDE|0.0|76.8|594/600| PROS 56->65|PS00504|FRD_SDH_FAD_BINDING|PDOC00393| SEG 27->40|gaggaglratlgma| BL:PDB:NREP 1 BL:PDB:REP 14->613|1zoyA|0.0|62.5|597/613| RP:PDB:NREP 1 RP:PDB:REP 18->613|2bs2A|1e-89|32.3|573/655| RP:PFM:NREP 2 RP:PFM:REP 22->418|PF00890|5e-90|55.3|369/375|FAD_binding_2| RP:PFM:REP 475->591|PF02910|1e-24|48.2|112/114|Succ_DH_flav_C| HM:PFM:NREP 2 HM:PFM:REP 22->418|PF00890|4.2e-125|46.6|373/421|FAD_binding_2| HM:PFM:REP 473->613|PF02910|1.7e-46|52.7|129/129|Succ_DH_flav_C| GO:PFM:NREP 4 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02910|IPR004112| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02910|IPR004112| RP:SCP:NREP 3 RP:SCP:REP 22->302|1e7pA2|2e-81|34.8|279/336|c.3.1.4| RP:SCP:REP 250->368|3cirM3|2e-19|55.6|63/64|d.168.1.1| RP:SCP:REP 464->597|1kf6A1|9e-45|36.6|131/134|a.7.3.1| HM:SCP:REP 1->456|1jnrA2|7.5e-81|39.4|320/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 464->613|2bs2A1|3.5e-50|44.2|138/0|a.7.3.1|1/1|Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain| OP:NHOMO 2242 OP:NHOMOORG 1039 OP:PATTERN 11-1-12222122222-2112211322332121111111111111111-----111111111111-11 2322612111111234444-45223444444344554354233223222111332314--334233355321111222-23222222222222222---21311121233111-11111111111333333333332222211-4122232222222222111222222231221222211122212222122222222222222222222222222222221222222212211111111111111121111-1-1111-111-111-1-1111-111------------------------------------1---111-243111111111-11112211112311-21123331231133----1-2-222222211111233352322222211111111112-32222324232122232222222224222122212312211111111222-23121121111121111111111111111111112222111113222222222223323222212222232322443222222222333232221332222222222223231222222322231322342222333333252221122221112111111134434113332222222345665265544646547551-12232------33442433333333333-333333333333233333333333332333333333333333332232222213333333333331122222222222222121111111111-21112222222222233323323223223222222222222223333333333333311111111112222113-332222------------------------------------------1---222 11--112-832-11132331211222122112222222322222221111111111111212113122-2332124424523332221-12121171111131312-1112211122111-12-121225h1-4421111111---111112111221113215143411A32211222*3222232642322243331 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 608 STR:RPRED 99.2 SQ:SECSTR #####cTTcHHHcHcccEEEccEEEEcccHHHHHHHHHHHTTTccEEEEccccGGGcGGGGccccEEccccccGTccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccccccEEEEccccccccccccTTcccccEEccTTcHHHHHHHHHHHHHHHHTcEEEccEEEEEEEEETTEEEEEEEEETTTccEEEEEccEcEEEcccccGGGcccccccTTcccHHHHHHHTTccccEEcTTcEEEEcccTTTcccccTHHHHHTcEEEcTTccccHHHHcTTTGGGccHHHHHHHHHHHHHTTTcccTTcccEEEEcGGGcHHHHHHHcHHHHHHHHHTccccTTTccEEEccEEEEEccEEEccTTcccccTTcTcccccccTEEEcGGGEEccccTTcccTTHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHTTcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcccTTccccccccEETTTccEEEEEEcTTccccEEEEEEccccccccTGGGcccccccccc DISOP:02AL 1-15, 438-447| PSIPRED cccccccccccccccccccEEcEEEEcccHHHHHHHHHHHHccccEEEEEcccccccccEEccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEcccEEEEEEEEEccccEEEEEEEccEEEEcccHHHHHccccccccccHHHHHHHHHccccEEccccEEEEEEEEcccccEEEccEEccccEEEccccccccccccHHHHccccHHHHHHHHHHHHHHcccccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccEEEcccEEEEEccccccccccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHcEEEEEEEcccccEEEEEEccccccccccccccccccccccc //