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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : sdhB
DDBJ      :sdhB         succinate dehydrogenase iron-sulfur
Swiss-Prot:             

Homologs  Archaea  54/68 : Bacteria  632/915 : Eukaryota  187/199 : Viruses  0/175   --->[See Alignment]
a.1.2d.15.4
:259 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->254 1yq3B PDBj e-100 72.4 %
:RPS:PDB   29->257 2bs2B PDBj 2e-35 28.2 %
:RPS:SCOP  28->128 1kf6B2  d.15.4.2 * 2e-20 37.0 %
:RPS:SCOP  132->257 1e7pB1  a.1.2.1 * 6e-38 28.0 %
:HMM:SCOP  23->128 1kf6B2 d.15.4.2 * 4.5e-32 38.1 %
:HMM:SCOP  129->259 1nekB1 a.1.2.1 * 4e-39 41.2 %
:HMM:PFM   47->94 PF00111 * Fer2 2.4e-06 27.9 43/77  
:BLT:SWISS 1->259 DHSB_PARDE e-127 76.8 %
:PROS 80->88|PS00197|2FE2S_FER_1
:PROS 170->181|PS00198|4FE4S_FER_1

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88364.1 GT:GENE sdhB GT:PRODUCT succinate dehydrogenase iron-sulfur GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2627940..2628719) GB:FROM 2627940 GB:TO 2628719 GB:DIRECTION - GB:GENE sdhB GB:PRODUCT succinate dehydrogenase iron-sulfur GB:PROTEIN_ID AAK88364.1 GB:DB_XREF GI:15157849 GB:GENE:GENE sdhB LENGTH 259 SQ:AASEQ MVELALPKNSQISEGKVWPKPDGAKNVREYRIYRWNPDDGQNPRIDTYYIDVDDCGPMVLDALLYIKNNIDPTLTLRRSCREGICGSCAMNIDGTNTLACTKGMEEIKGTVKVYPLPHMPVVKDLVPDLSNFYAQHRSIEPWLKTVSPTPAKEWKQSHEDRLKLDGLYECILCACCSTSCPSYWWNGDRYLGPAVLLQAYRWLIDSRDEATGERLDNLEDPFRLYRCHTIMNCAQACPKGLNPAKAIAEIKKMMVERRV GT:EXON 1|1-259:0| BL:SWS:NREP 1 BL:SWS:REP 1->259|DHSB_PARDE|e-127|76.8|259/259| PROS 80->88|PS00197|2FE2S_FER_1|PDOC00175| PROS 170->181|PS00198|4FE4S_FER_1|PDOC00176| BL:PDB:NREP 1 BL:PDB:REP 27->254|1yq3B|e-100|72.4|228/242| RP:PDB:NREP 1 RP:PDB:REP 29->257|2bs2B|2e-35|28.2|227/239| HM:PFM:NREP 1 HM:PFM:REP 47->94|PF00111|2.4e-06|27.9|43/77|Fer2| RP:SCP:NREP 2 RP:SCP:REP 28->128|1kf6B2|2e-20|37.0|100/105|d.15.4.2| RP:SCP:REP 132->257|1e7pB1|6e-38|28.0|125/133|a.1.2.1| HM:SCP:REP 23->128|1kf6B2|4.5e-32|38.1|105/105|d.15.4.2|1/1|2Fe-2S ferredoxin-like| HM:SCP:REP 129->259|1nekB1|4e-39|41.2|131/0|a.1.2.1|1/1|alpha-helical ferredoxin| OP:NHOMO 1184 OP:NHOMOORG 873 OP:PATTERN 11-1-1111111111111212111111111111111111111111111-1---1-------1111-11 -2-12---------22233-32112233333222222143111-121-1111111111--111-222221-1111111-112122222--------------------1-11111111111111111111211132--------111111111-1--------12111111------------11111---1111111111111111111111111111111111------1111111111111111111111---------------------------------------------------------------------------------------11---------2--1111-12---2---------1-111111111121111111111111111111111-11111212111111111111111111111122212211111111111111-11111121111111111111111111111111111111-111121221212222244122222-2121111111231111111111222121-1-211111111111211--1--111121222-----1--------11-31221122221111111111122323--221111111122333313222232222322--11121------22222212222222222-221222222222222222222222222222222222222222222222222112222222222221111111111111111111111111111111111111111111111111111111111111111111111112222222222222211111111111111--1-------------------------------------------------------- 11--111-522-11111111111111111111111111111111111111111111111111111111112111111-1111111111-111111121111-1212-11-1242211111112111131161-11211111111-11111111111211-2311112211211211111K1111112831361122221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 233 STR:RPRED 90.0 SQ:SECSTR ########################EEEEEEEEEEccTTTTcccEEEEEEEEccTcTccHHHHHHHHHHHTcTTcccccccccccccTTEEEETTEEEEGGGccGGGcTTEEEEEccTTcEEEETTEEEcHHHHHHHHHHTTcccccccTTcccccccHHHHHHHHHHHTcccccHHHHTcHHHHHcTTTccHHHHHHHHHHHHTcTTccccHHHHHHHHccTTGGGcccccHHHHHcTTcccHHHHHHHHHHHHTTc## DISOP:02AL 3-4, 6-26, 149-155| PSIPRED ccEEccccccccccccccccccccccEEEEEEEEEcccccccccEEEEEEEEccccccHHHHHHHHHHHccccEEEEcccccccccccEEEEccEEcHHHcccHHHcccEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccEEEEcccccccHHHHHHHHHHHccccccHHHHHHHHHccccccccccccccHHHHccccccHHHHHHHHHHHHHHHcc //