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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : sdhD
DDBJ      :sdhD         succinate dehydrogenase hydrophobic membrane anchor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  105/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.21.2
:126 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->100 1nekD PDBj 3e-05 27.4 %
:RPS:SCOP  14->100 1nekD  f.21.2.2 * 3e-22 26.4 %
:HMM:SCOP  10->122 1nekD_ f.21.2.2 * 1.5e-29 35.4 %
:HMM:PFM   1->110 PF01127 * Sdh_cyt 6.3e-20 26.6 109/121  
:BLT:SWISS 2->110 DHSD_RICBR 1e-13 30.3 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88366.1 GT:GENE sdhD GT:PRODUCT succinate dehydrogenase hydrophobic membrane anchor GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2630584..2630964) GB:FROM 2630584 GB:TO 2630964 GB:DIRECTION - GB:GENE sdhD GB:PRODUCT succinate dehydrogenase hydrophobic membrane anchor GB:PROTEIN_ID AAK88366.1 GB:DB_XREF GI:15157851 GB:GENE:GENE sdhD LENGTH 126 SQ:AASEQ MDMRTPLGKVRGLGSAKEGTDHFLRQRVTAVANVPLLIFFVIFLIKYAGAPYPEVVAALSNPLVAVIMALVLVSGLIHMKLGMQVIIEDYVHAEVSKLVLLMLNTFFAILIGGLSIFAILKIAFAG GT:EXON 1|1-126:0| BL:SWS:NREP 1 BL:SWS:REP 2->110|DHSD_RICBR|1e-13|30.3|109/125| TM:NTM 3 TM:REGION 27->49| TM:REGION 58->80| TM:REGION 97->119| BL:PDB:NREP 1 BL:PDB:REP 17->100|1nekD|3e-05|27.4|84/113| HM:PFM:NREP 1 HM:PFM:REP 1->110|PF01127|6.3e-20|26.6|109/121|Sdh_cyt| RP:SCP:NREP 1 RP:SCP:REP 14->100|1nekD|3e-22|26.4|87/113|f.21.2.2| HM:SCP:REP 10->122|1nekD_|1.5e-29|35.4|113/0|f.21.2.2|1/1|Fumarate reductase respiratory complex transmembrane subunits| OP:NHOMO 107 OP:NHOMOORG 105 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111111111111111111111111111111-1111111111111111111131111111-111----11111111111111-1111--------------11--------------1111---------------------------------------------------------------------------------------------------------------------------------------------------------------------11-------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------11111111111111----------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 84 STR:RPRED 66.7 SQ:SECSTR ################ccHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHH########################## DISOP:02AL 8-18| PSIPRED ccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //