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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : sigD
DDBJ      :sigD         ECF family sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  97/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13a.4.6
:169 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   38->140 1or7A PDBj 2e-04 30.1 %
:RPS:PDB   36->165 3dxjF PDBj 7e-10 12.3 %
:RPS:SCOP  36->104 1or7A2  a.177.1.1 * 8e-09 24.6 %
:RPS:SCOP  108->169 1yioA1  a.4.6.2 * 3e-04 18.0 %
:HMM:SCOP  1->103 1or7A2 a.177.1.1 * 1e-17 36.0 %
:HMM:SCOP  76->167 1iw7F2 a.4.13.2 * 8.2e-09 27.2 %
:RPS:PFM   37->82 PF04542 * Sigma70_r2 2e-04 45.7 %
:HMM:PFM   15->85 PF04542 * Sigma70_r2 2.4e-16 37.7 69/71  
:HMM:PFM   109->159 PF08281 * Sigma70_r4_2 5.2e-10 37.3 51/54  
:BLT:SWISS 28->166 NCCH_ALCXX 1e-08 33.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88009.2 GT:GENE sigD GT:PRODUCT ECF family sigma factor GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2241972..2242481) GB:FROM 2241972 GB:TO 2242481 GB:DIRECTION - GB:GENE sigD GB:PRODUCT ECF family sigma factor GB:PROTEIN_ID AAK88009.2 GB:DB_XREF GI:159140402 GB:GENE:GENE sigD LENGTH 169 SQ:AASEQ MLRSLDGDEASYRHLLHALRRLLVAYYGRRMADAARADVEDLVQETLLSLHAKRETYDRARPFTAWFFSIARYKLIDHYRGRGRRMFSEVELDETLEAESSVDAVTARMDVERLLNELPERQRDLIRRVKLEGQSIAEAAEKSGQTELAARVGIHRTLKVLAAKLRGDI GT:EXON 1|1-169:0| BL:SWS:NREP 1 BL:SWS:REP 28->166|NCCH_ALCXX|1e-08|33.8|139/186| SEG 12->27|yrhllhalrrllvayy| BL:PDB:NREP 1 BL:PDB:REP 38->140|1or7A|2e-04|30.1|103/181| RP:PDB:NREP 1 RP:PDB:REP 36->165|3dxjF|7e-10|12.3|130/349| RP:PFM:NREP 1 RP:PFM:REP 37->82|PF04542|2e-04|45.7|46/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 15->85|PF04542|2.4e-16|37.7|69/71|Sigma70_r2| HM:PFM:REP 109->159|PF08281|5.2e-10|37.3|51/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 2 RP:SCP:REP 36->104|1or7A2|8e-09|24.6|69/113|a.177.1.1| RP:SCP:REP 108->169|1yioA1|3e-04|18.0|61/70|a.4.6.2| HM:SCP:REP 1->103|1or7A2|1e-17|36.0|100/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 76->167|1iw7F2|8.2e-09|27.2|92/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 121 OP:NHOMOORG 98 OP:PATTERN -------------------------------------------------------------------- 1-1-1--------------------1-------1-1------------------------------1---------------------11---1--------------1--------------------------------------------------------------------------------------------------------------------------3------------------------------------------------------------------------------------------------------------------------------------------1----2111------112133-31121111111111111-111-1111-1--211-221221-112-11------------------111-----------------------------------1--1------------3------21111-1---1---1------------1-1--2-------------------2--------------------------1-21------------------------------------------------------1----------------------11-----------------------------------------------------------------------------------------------------------------------------1----1111-----------------1------------------------------1111-----------------------------------------------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 130 STR:RPRED 76.9 SQ:SECSTR ###################################cccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHH#### DISOP:02AL 1-1,4-5,7-7,169-170| PSIPRED cHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccc //