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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : sipf
DDBJ      :sipf         prokaryotic type I signal peptidase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  769/915 : Eukaryota  16/199 : Viruses  0/175   --->[See Alignment]
b.87.1
:248 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->221 1b12D PDBj 8e-37 49.4 %
:RPS:PDB   30->222 1b12A PDBj 2e-39 44.9 %
:RPS:SCOP  30->231 1b12A  b.87.1.2 * 4e-50 46.6 %
:HMM:SCOP  30->247 1b12A_ b.87.1.2 * 1.7e-67 50.2 %
:RPS:PFM   39->117 PF00717 * Peptidase_S24 6e-12 62.1 %
:RPS:PFM   90->215 PF10502 * Peptidase_S26 4e-14 53.2 %
:HMM:PFM   38->126 PF00717 * Peptidase_S24 2e-26 57.8 64/70  
:HMM:PFM   177->219 PF10502 * Peptidase_S26 1.1e-08 33.3 42/138  
:HMM:PFM   134->142 PF00123 * Hormone_2 0.00015 88.9 9/28  
:BLT:SWISS 23->245 LEP_RICTY 2e-49 47.7 %
:PROS 41->48|PS00501|SPASE_I_1
:PROS 105->117|PS00760|SPASE_I_2
:PROS 186->199|PS00761|SPASE_I_3
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86842.1 GT:GENE sipf GT:PRODUCT prokaryotic type I signal peptidase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1026692..1027438 GB:FROM 1026692 GB:TO 1027438 GB:DIRECTION + GB:GENE sipf GB:PRODUCT prokaryotic type I signal peptidase GB:PROTEIN_ID AAK86842.1 GB:DB_XREF GI:15156054 GB:GENE:GENE sipf LENGTH 248 SQ:AASEQ MSEKAEKKQNALWENVKVIIQALLLAMVIRTVLFQPFTIPSGSMMPTLLVGDYLFVNKFSYGYSKYSLPFSPNLFSGRILEFSKPKRGDVVVFRLPPNPEVDYIKRLVGLPGDRVQVTNGVLFINGQPVPKQPDGTFTSDYRADPGTNVPVFRETLDNGVTYDTLDQSPDSRGDNTREFVVPEGHYFMMGDNRDNSLDSRFDVGFVPEENLIGRASVIFFSLGNDTPFSRIWEWPANMRWDRLFKVVG GT:EXON 1|1-248:0| BL:SWS:NREP 1 BL:SWS:REP 23->245|LEP_RICTY|2e-49|47.7|218/264| PROS 41->48|PS00501|SPASE_I_1|PDOC00418| PROS 105->117|PS00760|SPASE_I_2|PDOC00418| PROS 186->199|PS00761|SPASE_I_3|PDOC00418| TM:NTM 1 TM:REGION 15->37| BL:PDB:NREP 1 BL:PDB:REP 30->221|1b12D|8e-37|49.4|180/222| RP:PDB:NREP 1 RP:PDB:REP 30->222|1b12A|2e-39|44.9|185/239| RP:PFM:NREP 2 RP:PFM:REP 39->117|PF00717|6e-12|62.1|58/70|Peptidase_S24| RP:PFM:REP 90->215|PF10502|4e-14|53.2|94/101|Peptidase_S26| HM:PFM:NREP 3 HM:PFM:REP 38->126|PF00717|2e-26|57.8|64/70|Peptidase_S24| HM:PFM:REP 177->219|PF10502|1.1e-08|33.3|42/138|Peptidase_S26| HM:PFM:REP 134->142|PF00123|0.00015|88.9|9/28|Hormone_2| RP:SCP:NREP 1 RP:SCP:REP 30->231|1b12A|4e-50|46.6|193/239|b.87.1.2| HM:SCP:REP 30->247|1b12A_|1.7e-67|50.2|201/247|b.87.1.2|1/1|LexA/Signal peptidase| OP:NHOMO 1048 OP:NHOMOORG 785 OP:PATTERN -------------------------------------------------------------------- 335-11-1111121-------111-1------1111-1111-----1-111-1-1---1121--1-12-1------11-11-11111111111-221111111111111----------------1111111111111111--12132322221111-1-1-122122222--1-111---11112--1111124545554535555542122245562232311333333221111111111111111222-411111112222211112--1221-11111111111-----------1111111111111-1-11111111-124-------2---211111-21311212113411111-111111-1131-222111111113322122212111111111112-11111111111121121111121111112111111111111111111122211111111111111111111111111111111112212111111111211211111122111111122111111222111111111111111211211111111111111331111111211111111211211222212121111111111111111111111111111111133122113322212222122221121-1111111-11111111111111111111-1111111111111-1111111111111111111111111111111111111111111111111111121222221111111111111121111-111111111111111122221112111111111111111111111111111111111221111111111111112221111111-1----------------------------------1-11111-2- --------------------------------------------------------------------------------------------------------------------------------------------------------------1----1------------1-161---13225-31-11---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 217 STR:RPRED 87.5 SQ:SECSTR ############################cccccEEEEEccccTTTTTccTTEEEEEEEcEEEEEcGGGccEEEcTTcEEEEEccccTTcEEEEEcTTcTTcEEEEEEEEcTTcEEEEETTTTEEEEETccTTcccTTEEEEEEEEEEETTEEEEEEEcTTccccGGGccccTTccTTEEEccTTEEEEEcccTTccccHHH#HccEEGGGEEEEEEEEEEEcEcccEccccccEEccccGGGcEEc## DISOP:02AL 1-11| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEcccccccccccccEEEEEEEccccccccccccccccccEEEEccccccccEEEEEcccccccEEEEEEEEccccEEEEEccEEEEccEEcccccccccccccccccccEEEEEEEcccccEEEEEEccccccccccccEEEEcccEEEEEEcccccccccccccccccHHHEEEEEEEEEEcccccccccccccccccccHHHcccccc //