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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : tdk
DDBJ      :tdk          thymidine kinase
Swiss-Prot:KITH_AGRT5   RecName: Full=Thymidine kinase;         EC=2.7.1.21;

Homologs  Archaea  6/68 : Bacteria  317/915 : Eukaryota  3/199 : Viruses  6/175   --->[See Alignment]
c.37.1g.39.1
:163 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->153 2ja1A PDBj 1e-08 27.1 %
:RPS:PDB   53->158 3e2iA PDBj 3e-19 24.5 %
:RPS:SCOP  114->158 2b8tA2  g.39.1.14 * 6e-15 26.7 %
:HMM:SCOP  1->111 2b8tA1 c.37.1.24 * 1.5e-26 42.2 %
:HMM:SCOP  112->160 1xx6A2 g.39.1.14 * 1e-13 42.9 %
:RPS:PFM   2->156 PF00265 * TK 5e-38 50.3 %
:HMM:PFM   1->156 PF00265 * TK 2.4e-40 30.1 146/176  
:BLT:SWISS 1->163 KITH_AGRT5 4e-93 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88024.2 GT:GENE tdk GT:PRODUCT thymidine kinase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2254496..2254987 GB:FROM 2254496 GB:TO 2254987 GB:DIRECTION + GB:GENE tdk GB:PRODUCT thymidine kinase GB:PROTEIN_ID AAK88024.2 GB:DB_XREF GI:159140411 GB:GENE:GENE tdk LENGTH 163 SQ:AASEQ MRTLIFTAAFDDRAGVGRVASRIGLSSEARTFDENTDLFAEVAALHAQAPVACVFVDEANFLSEHHVWQLANIADRLNIPVMTYGLRTDFQGKLFPASKELLAIADELREIRTICHCGRKATMVARFDSEGKVVTEGAQIEVGGNGKYVSFCRRHWVETFNCS GT:EXON 1|1-163:0| SW:ID KITH_AGRT5 SW:DE RecName: Full=Thymidine kinase; EC=2.7.1.21; SW:GN Name=tdk; OrderedLocusNames=Atu2282; ORFNames=AGR_C_4147; SW:KW ATP-binding; Complete proteome; Cytoplasm; DNA synthesis; Kinase;Nucleotide-binding; Transferase. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->163|KITH_AGRT5|4e-93|100.0|163/193| GO:SWS:NREP 6 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006260|"GO:DNA replication"|DNA synthesis| GO:SWS GO:0016301|"GO:kinase activity"|Kinase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| BL:PDB:NREP 1 BL:PDB:REP 4->153|2ja1A|1e-08|27.1|144/193| RP:PDB:NREP 1 RP:PDB:REP 53->158|3e2iA|3e-19|24.5|102/170| RP:PFM:NREP 1 RP:PFM:REP 2->156|PF00265|5e-38|50.3|153/184|TK| HM:PFM:NREP 1 HM:PFM:REP 1->156|PF00265|2.4e-40|30.1|146/176|TK| GO:PFM:NREP 2 GO:PFM GO:0004797|"GO:thymidine kinase activity"|PF00265|IPR001267| GO:PFM GO:0005524|"GO:ATP binding"|PF00265|IPR001267| RP:SCP:NREP 1 RP:SCP:REP 114->158|2b8tA2|6e-15|26.7|45/67|g.39.1.14| HM:SCP:REP 1->111|2b8tA1|1.5e-26|42.2|109/0|c.37.1.24|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 112->160|1xx6A2|1e-13|42.9|49/0|g.39.1.14|1/1|Glucocorticoid receptor-like (DNA-binding domain)| OP:NHOMO 333 OP:NHOMOORG 332 OP:PATTERN ------------------11-------------------------------------1111------- ----1---------------------------------------11211111111111--111111-111---------------------------------------------------------------------11--------------------------------------------------1-1---------------1-------1---1---1111111---------------------1111-11111111111111111111111111111111111111111111111111111111111111111----1-------1-1----11111----------------------------1-------------------------------------------1--1111111111-1--111111----111----------------------------------------------11111----------------------------------------------1---------1-------------------------------------------------------------------------11-1--111111111111111111111111-------------11111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111--111111111----1111111111111111-----------------------------111111111-111111111111111111111111--------------------------------------111------------1--1------ --11------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------- ---1---------------1---------------111-1--------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 159 STR:RPRED 97.5 SQ:SECSTR ccEEEEEETTcccccccEEEcTTccEEEcEEEccGGGGGGHHHcTGccccccEEEEccGGGccTHHHHHHHHHHHTTTcEEEEEEEcccTTccccccTTHHHHHccEEEEEcEEcTTccEEcEEEEEETTEEccTTcccccccccEEEEEEcGGGcccc#### DISOP:02AL 163-164| PSIPRED cEEEEEEEEccccccccEEEEccccEEEEEEEccHHHHHHHHHHHHccccEEEEEEEcHHcccHHHHHHHHHHHHHcccEEEEEEEccccccccccHHHHHHHHHcEEEEEEEEEEccccccEEEEEEccccccccccEEEEcccccEEEHHHHcccHHHccc //