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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : thrS
DDBJ      :thrS         threonyl-tRNA synthetase
Swiss-Prot:SYT_AGRT5    RecName: Full=Threonyl-tRNA synthetase;         EC=6.1.1.3;AltName: Full=Threonine--tRNA ligase;         Short=ThrRS;

Homologs  Archaea  68/68 : Bacteria  908/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
c.116.1c.51.1d.104.1d.15.10d.67.1
:667 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->658 1qf6A PDBj 0.0 49.9 %
:RPS:PDB   70->539 2cjaB PDBj 6e-89 14.7 %
:RPS:SCOP  5->62 1nyqA2  d.15.10.1 * 3e-17 48.3 %
:RPS:SCOP  63->244 1nyqA3  d.67.1.1 * 1e-53 49.2 %
:RPS:SCOP  244->550 1evkA2  d.104.1.1 * e-119 58.1 %
:RPS:SCOP  529->650 1o6dA  c.116.1.3 * 3e-28 9.8 %
:HMM:SCOP  5->63 1qf6A2 d.15.10.1 * 7.8e-13 52.5 %
:HMM:SCOP  65->243 1qf6A3 d.67.1.1 * 5.3e-65 50.0 %
:HMM:SCOP  244->551 1evlA2 d.104.1.1 * 6.6e-92 31.7 %
:HMM:SCOP  548->651 1nj1A1 c.51.1.1 * 3.7e-27 35.6 %
:RPS:PFM   5->63 PF02824 * TGS 3e-09 49.2 %
:RPS:PFM   181->221 PF07973 * tRNA_SAD 4e-06 66.7 %
:RPS:PFM   291->448 PF00587 * tRNA-synt_2b 7e-15 34.2 %
:RPS:PFM   561->647 PF03129 * HGTP_anticodon 2e-09 31.0 %
:HMM:PFM   277->448 PF00587 * tRNA-synt_2b 1.7e-42 30.0 160/173  
:HMM:PFM   560->648 PF03129 * HGTP_anticodon 4.1e-21 39.3 89/94  
:HMM:PFM   172->221 PF07973 * tRNA_SAD 6.8e-16 40.5 42/44  
:HMM:PFM   8->62 PF02824 * TGS 8.2e-09 40.0 55/60  
:BLT:SWISS 1->667 SYT_AGRT5 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87515.1 GT:GENE thrS GT:PRODUCT threonyl-tRNA synthetase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1732562..1734565) GB:FROM 1732562 GB:TO 1734565 GB:DIRECTION - GB:GENE thrS GB:PRODUCT threonyl-tRNA synthetase GB:PROTEIN_ID AAK87515.1 GB:DB_XREF GI:15156846 GB:GENE:GENE thrS LENGTH 667 SQ:AASEQ MSEAISLTFPDGSVRSYPAGTTGREVAESISKSLAKKAVAIALDGTVRDLSETITDGKIEIVTREDGRALELIRHDAAHVMAEAVQELWPGTQVTIGPVIENGFYYDFAKNEPFTPEDLPKIEKRMKEIIQRNKPFTREIWSREKAKEVFAAKGENYKVELVDAIPEGQDLKIYYQGDWFDLCRGPHMASTGQIGTAFKLMKVAGAYWRGDSNNAMLSRIYGTAWATQEELDNYLHVLAEAEKRDHRRLGREMDLFHFQEEGPGVVFWHGKGWRMFQTLTAYMRRRLANTYQEVNAPQVLDKSLWETSGHWGWYQENMFAVKSAHAFTHPDDKEADQRVFALKPMNCPGHVQIFKHGLKSYREMPVRLAEFGNVHRYEASGALHGLMRVRGFTQDDAHVFCTEEQMAAECLRINDLILSVYEDFGFSEIVVKLSTRPEKRVGSDDLWDRAESVMLEVLKTIEEQSGGRIKTGILPGEGAFYGPKFEYTLKDAIGREWQCGTTQVDFNLPERFGAFYIDQNSEKTQPVMIHRAICGSMERFLGILIENFAGHMPLWFAPLQVVVATITSDADDYGREVAEALREAGMAVETDFRNEKINYKVREHSVTKVPVIIVCGRKEAEERTVNIRRLGSQNQTSMSLEEAITSLVDEATPPDVKRKLAAKKQLA GT:EXON 1|1-667:0| SW:ID SYT_AGRT5 SW:DE RecName: Full=Threonyl-tRNA synthetase; EC=6.1.1.3;AltName: Full=Threonine--tRNA ligase; Short=ThrRS; SW:GN Name=thrS; OrderedLocusNames=Atu1746; ORFNames=AGR_C_3205; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Metal-binding; Nucleotide-binding; Protein biosynthesis; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->667|SYT_AGRT5|0.0|100.0|667/667| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 7->658|1qf6A|0.0|49.9|633/641| RP:PDB:NREP 1 RP:PDB:REP 70->539|2cjaB|6e-89|14.7|435/476| RP:PFM:NREP 4 RP:PFM:REP 5->63|PF02824|3e-09|49.2|59/60|TGS| RP:PFM:REP 181->221|PF07973|4e-06|66.7|33/44|tRNA_SAD| RP:PFM:REP 291->448|PF00587|7e-15|34.2|146/170|tRNA-synt_2b| RP:PFM:REP 561->647|PF03129|2e-09|31.0|87/91|HGTP_anticodon| HM:PFM:NREP 4 HM:PFM:REP 277->448|PF00587|1.7e-42|30.0|160/173|tRNA-synt_2b| HM:PFM:REP 560->648|PF03129|4.1e-21|39.3|89/94|HGTP_anticodon| HM:PFM:REP 172->221|PF07973|6.8e-16|40.5|42/44|tRNA_SAD| HM:PFM:REP 8->62|PF02824|8.2e-09|40.0|55/60|TGS| GO:PFM:NREP 14 GO:PFM GO:0005524|"GO:ATP binding"|PF07973|IPR012947| GO:PFM GO:0005737|"GO:cytoplasm"|PF07973|IPR012947| GO:PFM GO:0006412|"GO:translation"|PF07973|IPR012947| GO:PFM GO:0016876|"GO:ligase activity, forming aminoacyl-tRNA and related compounds"|PF07973|IPR012947| GO:PFM GO:0043039|"GO:tRNA aminoacylation"|PF07973|IPR012947| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00587|IPR002314| GO:PFM GO:0005524|"GO:ATP binding"|PF00587|IPR002314| GO:PFM GO:0005737|"GO:cytoplasm"|PF00587|IPR002314| GO:PFM GO:0006412|"GO:translation"|PF00587|IPR002314| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF03129|IPR004154| GO:PFM GO:0005524|"GO:ATP binding"|PF03129|IPR004154| GO:PFM GO:0006412|"GO:translation"|PF03129|IPR004154| RP:SCP:NREP 4 RP:SCP:REP 5->62|1nyqA2|3e-17|48.3|58/59|d.15.10.1| RP:SCP:REP 63->244|1nyqA3|1e-53|49.2|179/179|d.67.1.1| RP:SCP:REP 244->550|1evkA2|e-119|58.1|289/291|d.104.1.1| RP:SCP:REP 529->650|1o6dA|3e-28|9.8|122/147|c.116.1.3| HM:SCP:REP 5->63|1qf6A2|7.8e-13|52.5|59/0|d.15.10.1|1/1|TGS-like| HM:SCP:REP 65->243|1qf6A3|5.3e-65|50.0|178/179|d.67.1.1|1/1|ThrRS/AlaRS common domain| HM:SCP:REP 244->551|1evlA2|6.6e-92|31.7|290/0|d.104.1.1|1/1|Class II aaRS and biotin synthetases| HM:SCP:REP 548->651|1nj1A1|3.7e-27|35.6|104/127|c.51.1.1|1/1|Class II aaRS ABD-related| OP:NHOMO 1624 OP:NHOMOORG 1171 OP:PATTERN 11121111222222211111111111111111111111111111111111111111111111111111 1111211111111111111-11111111111111112211122212112111111112112212112121111111112111111111221111111--1111111111111111111111111211111111111111111111133111121111111111111122111111111111111111112111122222222222222221222222211121111111111211111111111111121121111111111111111111111111111111111111111111111111111111111111111111111121113111111111221112111212111113111121221111223111111111111111111211111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111121111111221111111111111111111111121111111111111111111211111111111111111111111111121111111111111111111111111111111111111111112222111111111111111-1111111111121111111111111111-11111111111111111111121111111111111111111111111111111111111111111111122222111111212111111111111111111111111111111112111111111111111111111111311111211111111111111111111111111111111111121111111-11111111111111111111111111111111 1111222-311122212222222222222222222122222222222222222212222222222222222222222-2322222222-1312111111111222212B324734643323333573639T3-66B3333933442334333494433213A11121311512322222F2222242442432252223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 665 STR:RPRED 99.7 SQ:SECSTR ##ccccccccccTTcccccEEETTEHHHHHHEEEEEEccTTcccEEEEcccccccEEEEEEEEccccGGEEEEEcccccTTHHHHHHHHHHHHHTGccTTcccEEEEEEGGGTTEcccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEEEEEEEEcccccccccccTTEEEEEETTTEEEEEEcccHHHHTTHHHHHHHHHHHHHHHHHTTTcccccEEEEEccccccccccHHHHHTTcEEcTTcEEEcHHHHHHHHHHHHHHHHHTTTTTcEEccccEEEHHHHHHHTGGGTcGGGccEEcccccccHHHHHHHcccccEEcccccGGGGTTTTccEEcTTTccEEEEEccEEEccccccccccTTcccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHHHTcccccEEEEccccEEEEEEEEEEccGGcTTcccccccTGcTTcccEEEEEEEEcTTHHHHHTTcEETTccccEEEEEEEEHHHHHHHHHHHHccTTcEcGGGccHHHHHHHcccccHHHHHHHHHcccGGGccHHHHHHHccccccccHHHHHHHHHHHTTTcccEEEcccccHHHHHHHHHHTTccEEEEEcHHHHTccEEEEEETTTccEEEEEHHHHHHHHHHHEEEHHHHHHHHHHHHHH DISOP:02AL 1-2, 206-214, 664-667| PSIPRED ccccEEEEEccccEEEEcccccHHHHHHHHcccccccEEEEEEccEEEEccEEEccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccccEEEEEcccccccHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHccccccHHHHHcccccEEEEEEEccEEEEccccccccHHccccEEEEEEEccHHcccccccccEEEEHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEcHHHHHHcccccccccccEEEEccccccccccccccccEEEEEccccHHHHHHHHHHcccHHHccEEEHHEEEEEEEcccccccccHHHHHHHHcccEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEccccEEEEcEEEEEcccccEEEEEEEcccccccccEEEEcccHHHHHHHHHHHHHHHccccccccccEEEEEEEccHHHHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHcccEEEEEccHHHHccEEEEEEccccEEEEEcHHHHHHHHHHHHHcHHHHHHHHHHHHcc //