[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : tktB
DDBJ      :tktB         transketolase
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  867/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.36.1
:269 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->238 1qgdA PDBj 1e-31 38.4 %
:RPS:PDB   2->257 1ay0A PDBj 7e-32 33.5 %
:RPS:SCOP  2->269 1ay0A1  c.36.1.10 * 1e-55 35.0 %
:HMM:SCOP  4->265 1r9jA2 c.36.1.10 * 1.1e-74 37.7 %
:RPS:PFM   9->238 PF00456 * Transketolase_N 7e-40 41.9 %
:HMM:PFM   7->252 PF00456 * Transketolase_N 8e-63 36.6 243/333  
:BLT:SWISS 1->267 TKTN_METJA 1e-56 42.1 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87663.1 GT:GENE tktB GT:PRODUCT transketolase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1878306..1879115 GB:FROM 1878306 GB:TO 1879115 GB:DIRECTION + GB:GENE tktB GB:PRODUCT transketolase GB:PROTEIN_ID AAK87663.1 GB:DB_XREF GI:15157018 GB:GENE:GENE tktB LENGTH 269 SQ:AASEQ MQSQELERIARQIRLRDVQAVFEAGAGHVGGEMSAIDIMTALYFRVLRIWPNDPKNPARDRFVLSKGHTACALYVTLAKRGFIPEEEISTFLQPNSRLNGHPNCNKVPGVETNTGPLGHGLPVAVGMATAAKLSGEDYHTYVMTGDGEMQEGSNWEAIMSAAQFKLNNLTLVIDHNRFQQGAAIADTNDVAPLRPKLEAFGWEVTEINGNAMAEVVPALEHRGNRPHCIVAHTNKGHGISFMQDRVDWHHKVPSKEQYEIAVKELSEAL GT:EXON 1|1-269:0| BL:SWS:NREP 1 BL:SWS:REP 1->267|TKTN_METJA|1e-56|42.1|266/274| BL:PDB:NREP 1 BL:PDB:REP 7->238|1qgdA|1e-31|38.4|229/662| RP:PDB:NREP 1 RP:PDB:REP 2->257|1ay0A|7e-32|33.5|248/678| RP:PFM:NREP 1 RP:PFM:REP 9->238|PF00456|7e-40|41.9|227/275|Transketolase_N| HM:PFM:NREP 1 HM:PFM:REP 7->252|PF00456|8e-63|36.6|243/333|Transketolase_N| RP:SCP:NREP 1 RP:SCP:REP 2->269|1ay0A1|1e-55|35.0|260/335|c.36.1.10| HM:SCP:REP 4->265|1r9jA2|1.1e-74|37.7|260/0|c.36.1.10|1/1|Thiamin diphosphate-binding fold (THDP-binding)| OP:NHOMO 1798 OP:NHOMOORG 1095 OP:PATTERN 11-1--1111111111-111111------1-----11111111-----------11-111-111--11 1241311111121211111-1111241111121111224211121121111142311111323132443311111111311111111111121111--11111211131311111111111111112112212122111111121122221131111111111111222222121121111111111111-11122222122122222231221122111111113444331211111111111111111111-11--1-1--123--1--1-1111112321122-11322223323231111111111111111111222321127111111131312111111112112121111111121122111112131111111111214451122322411111111113-22323422221122212333324416211112223311111111111232112321111111111---------------1111211111211114441422222222422222221132232111114211123313211212112111111111121121212-1111131111233222321113112111112111111111111111121111221171111111111111111111111111111-1221111111132322422223233322-2222233222232222224565321114333333333333333212122221122122222222211111111111112112111122111111111222222111113111111123111221221111111111122222222222322111111111111111131111122--------111----1-11121111111121111111211113121112 11--211-311112122224241333411-11111111111111112122234312211111113111111223222-2211111111-2422232545211122211222453321221223233242FP3-43332224225-2232131141112211-11111411511212111I1111142342222221111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 269 STR:RPRED 100.0 SQ:SECSTR ccccHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHTTccccTTcTTcTTccEEEEccGGGHHHHHHHHHHTTcccHHHHTTTTcTTccccccccTTccTTcccccccTTHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHcHHHHHHHHHHHHTTcTTEEEEEEEcEEGGGTccccHHHHHcHHHHHHHHTcEEEEEccTTTcHHHHHHHTcTTccEEEEEEccTTTTcTTTTcGGGTcccccHHHHHHHHHHHHHHHH DISOP:02AL 269-270| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEcccHHHHHHHHHHHcccccHHHHHHHccccccccccccccccccEEccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHccHHHHHHHHHHHHHcccccEEEEEEcccccccccHHHccccHHHHHHHHHccccEEEcccccHHHHHHHHHHHccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccc //