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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : tyrS
DDBJ      :tyrS         tyrosyl-tRNA synthetase
Swiss-Prot:SYY_AGRT5    RecName: Full=Tyrosyl-tRNA synthetase;         EC=6.1.1.1;AltName: Full=Tyrosine--tRNA ligase;         Short=TyrRS;

Homologs  Archaea  0/68 : Bacteria  906/915 : Eukaryota  179/199 : Viruses  0/175   --->[See Alignment]
c.26.1d.66.1
:417 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->312 1jilA PDBj 1e-71 44.9 %
:BLT:PDB   340->417 1jh3A PDBj 2e-05 30.8 %
:RPS:PDB   1->312 2akeA PDBj 2e-51 18.4 %
:RPS:PDB   333->396 1c05A PDBj 3e-05 20.3 %
:RPS:SCOP  6->312 1jiiA  c.26.1.1 * e-108 44.4 %
:RPS:SCOP  334->417 1h3eA2  d.66.1.4 * 2e-08 31.6 %
:HMM:SCOP  5->327 1jilA_ c.26.1.1 * 2.1e-98 43.8 %
:HMM:SCOP  308->417 1jh3A_ d.66.1.4 * 2e-18 38.4 %
:RPS:PFM   33->312 PF00579 * tRNA-synt_1b 1e-25 33.7 %
:HMM:PFM   34->328 PF00579 * tRNA-synt_1b 1.4e-77 37.8 283/292  
:HMM:PFM   355->395 PF01479 * S4 5.5e-08 36.6 41/48  
:BLT:SWISS 1->417 SYY_AGRT5 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87597.2 GT:GENE tyrS GT:PRODUCT tyrosyl-tRNA synthetase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1808346..1809599 GB:FROM 1808346 GB:TO 1809599 GB:DIRECTION + GB:GENE tyrS GB:PRODUCT tyrosyl-tRNA synthetase GB:PROTEIN_ID AAK87597.2 GB:DB_XREF GI:159140217 GB:GENE:GENE tyrS LENGTH 417 SQ:AASEQ MSRFKSDFLRTLDERGFIHQISDEAGLDELFAKETVTAYIGYDPTASSLHVGHLTQIMMLHWMQKTGHQPISLMGGGTGMVGDPSFKEEARKLMTIDMIEDNITSLKHVFANYLDYDRAENPALMINNADWLRGLNYLEFLRDVGRHFSVNRMLSFDSVKTRLDREQSLSFLEFNYMILQAYDFVELNQRTGCRLQMGGSDQWGNIINGIDLGHRMGTPQLYALTSPLLTTSSGAKMGKSASGAVWLNKDLLPVYDFWQYWRNTEDADVVRFAKLFTTLPMDEIARIATLGGSEINEAKKILATEVTAILHGRAAAEEAAETARKTFEEGALAENLPSIEVPTSELDAGVGVLSLIVRAGLASSNGEARRHVQGGAVKINEQGVSDERQIIGTGEVTGDGVIKLSVGKKKHVLVRPA GT:EXON 1|1-417:0| SW:ID SYY_AGRT5 SW:DE RecName: Full=Tyrosyl-tRNA synthetase; EC=6.1.1.1;AltName: Full=Tyrosine--tRNA ligase; Short=TyrRS; SW:GN Name=tyrS; OrderedLocusNames=Atu1828; ORFNames=AGR_C_3358; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis; RNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->417|SYY_AGRT5|0.0|100.0|417/417| GO:SWS:NREP 7 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| SEG 232->244|ssgakmgksasga| SEG 313->329|raaaeeaaetarktfee| BL:PDB:NREP 2 BL:PDB:REP 9->312|1jilA|1e-71|44.9|301/323| BL:PDB:REP 340->417|1jh3A|2e-05|30.8|78/99| RP:PDB:NREP 2 RP:PDB:REP 1->312|2akeA|2e-51|18.4|294/373| RP:PDB:REP 333->396|1c05A|3e-05|20.3|64/159| RP:PFM:NREP 1 RP:PFM:REP 33->312|PF00579|1e-25|33.7|261/279|tRNA-synt_1b| HM:PFM:NREP 2 HM:PFM:REP 34->328|PF00579|1.4e-77|37.8|283/292|tRNA-synt_1b| HM:PFM:REP 355->395|PF01479|5.5e-08|36.6|41/48|S4| GO:PFM:NREP 6 GO:PFM GO:0000166|"GO:nucleotide binding"|PF00579|IPR002305| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00579|IPR002305| GO:PFM GO:0005524|"GO:ATP binding"|PF00579|IPR002305| GO:PFM GO:0005737|"GO:cytoplasm"|PF00579|IPR002305| GO:PFM GO:0006412|"GO:translation"|PF00579|IPR002305| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00579|IPR002305| RP:SCP:NREP 2 RP:SCP:REP 6->312|1jiiA|e-108|44.4|304/319|c.26.1.1| RP:SCP:REP 334->417|1h3eA2|2e-08|31.6|79/81|d.66.1.4| HM:SCP:REP 5->327|1jilA_|2.1e-98|43.8|320/323|c.26.1.1|1/1|Nucleotidylyl transferase| HM:SCP:REP 308->417|1jh3A_|2e-18|38.4|99/99|d.66.1.4|1/1|Alpha-L RNA-binding motif| OP:NHOMO 1184 OP:NHOMOORG 1085 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111211111111111111111111111111111111111111111111111111111121112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122222222122222211221222211121111111111111111111111111111111212111111111111111111111111111111111111111111111111111111111111221111111122222222222211221111211111111122111111111111111111111111111111111111111111111111111-111111111111111111121111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112211111112111111111111111111111-111111111111111111111111-111-11111111111111111111111222111111111111111111111111111111111111111111111111111111111111111111-11111111111111111222211111111111111111111111111122222221221111111-11111111111111111111111111111111-11111111111111111111111111111111 11--111-1-----111111111111111111111111-21111111111111111111111111111-1111111112111111111-11-11111111111111-121211111-11-11111111-151-11111111111-111--11141111212111111111612221111A1111111121111111211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 417 STR:RPRED 100.0 SQ:SECSTR HHHHHTccccHHHHTTcEEEEEcHHHHHHHHHTTcEEEEEEEccccccccHHHHHHHHHHHHHHHHHTccEEEEcHHEEEcHHHHHHcHHHccccHHHHHHHHHHTHHHHHHHHTTTccTTcEEEEEHHHHHTTccHHHHHHHHHHTccHHHHccHHHHHHHHcccTTccHHHHTHHHHHHGGGHHTTccccEEEEEEEGGGHHHHHHHHHHHHHTTccccEEEEEccTTcccccccTTcGGGcccTTcccccHHHHHHHcccTTTTcHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHTccHHHHHHHHHHTTTcHHHccccTTTTTHHHTHHHHccTTTTTTTTTcccccHHHHHHHHTTcEEETTEEcccTTccccTTEEEEccccccccccEEEEEEEcc DISOP:02AL 1-3,158-168| PSIPRED ccHHHHHHHHHHHHccccHHcccHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEEEcHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEEEcHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccEEHHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEccEEcccccEEEEccccEEEEccccccHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccHHHHcccccHHHHHHHcccccccHHHHHHHHcccEEEccEEcccHHHcccHHHHccccEEEEEEccEEEEEEEEc //