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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : xdhA
DDBJ      :xdhA         xanthine dehydrogenase
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  387/915 : Eukaryota  143/199 : Viruses  0/175   --->[See Alignment]
a.56.1d.145.1d.15.4d.87.2
:489 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->477 2w3rA PDBj e-101 49.1 %
:RPS:PDB   3->471 2ckjA PDBj 4e-86 29.2 %
:RPS:SCOP  5->89 1dgjA2  d.15.4.2 * 3e-13 38.2 %
:RPS:SCOP  92->163 1ffuA1  a.56.1.1 * 5e-31 45.8 %
:RPS:SCOP  204->363 1rm6B2  d.145.1.3 * 2e-27 27.2 %
:RPS:SCOP  367->477 1jroA3  d.87.2.1 * 5e-28 52.8 %
:HMM:SCOP  2->89 1fo4A2 d.15.4.2 * 1.6e-18 39.8 %
:HMM:SCOP  84->214 1dgjA1 a.56.1.1 * 6.7e-39 45.0 %
:HMM:SCOP  157->367 1fo4A6 d.145.1.3 * 7e-60 36.5 %
:HMM:SCOP  368->482 1fo4A4 d.87.2.1 * 4.7e-37 47.0 %
:RPS:PFM   84->156 PF01799 * Fer2_2 5e-22 61.1 %
:RPS:PFM   204->363 PF00941 * FAD_binding_5 2e-19 32.5 %
:RPS:PFM   374->473 PF03450 * CO_deh_flav_C 3e-18 49.5 %
:HMM:PFM   201->364 PF00941 * FAD_binding_5 8.3e-51 36.6 164/171  
:HMM:PFM   373->473 PF03450 * CO_deh_flav_C 1.6e-38 50.5 101/103  
:HMM:PFM   84->158 PF01799 * Fer2_2 1e-31 54.1 74/75  
:HMM:PFM   21->55 PF00111 * Fer2 2.6e-06 32.4 34/77  
:BLT:SWISS 7->442 XDH_DROME 3e-62 35.3 %
:PROS 42->50|PS00197|2FE2S_FER_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88052.1 GT:GENE xdhA GT:PRODUCT xanthine dehydrogenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2284977..2286446 GB:FROM 2284977 GB:TO 2286446 GB:DIRECTION + GB:GENE xdhA GB:PRODUCT xanthine dehydrogenase GB:PROTEIN_ID AAK88052.1 GB:DB_XREF GI:15157474 GB:GENE:GENE xdhA LENGTH 489 SQ:AASEQ MKDAISFILNSETISLKDFGPTDTLLDYLRISKRLTGTKEGCAEGDCGACTVLVGRLLDGSLRYESVNACIRFLGSLHGTHIVTVEHLAVRDGALHPVQQAMVDFHGSQCGFCTPGFIMSLYGLWLSSETPGRADIEKALQGNLCRCTGYEPIVRAAEKIAAARPSALFDPLQRDRTDIMAKLWAVRENETIIVTHGEDRSIIPATLSDLTEIYAAEPKATIVAGSTDVGLWVTKQMRALNPVIFINNLGDLQTITVGEDGITLGAGVTYSQAFKTIAEHFPPLARLFDRLGGEQVRNMGTIGGNIANGSPIGDTPPALIALGATLTLRSSSGGRSLPLESYFIDYGKQDRLSGEFVEKLFIPFQKPESRYAVYKISKRRDEDISALCAAFNLTLDAEGTVEDILIAFGGMAGTPKRATHLEAALLGKEWSQETIDAARDALDEDFTPLTDWRATAEYRQLTAKNLLTRFFLETSGEKQELSRFSLEEA GT:EXON 1|1-489:0| BL:SWS:NREP 1 BL:SWS:REP 7->442|XDH_DROME|3e-62|35.3|436/1335| PROS 42->50|PS00197|2FE2S_FER_1|PDOC00175| SEG 325->339|tltlrsssggrslpl| BL:PDB:NREP 1 BL:PDB:REP 5->477|2w3rA|e-101|49.1|438/450| RP:PDB:NREP 1 RP:PDB:REP 3->471|2ckjA|4e-86|29.2|466/1264| RP:PFM:NREP 3 RP:PFM:REP 84->156|PF01799|5e-22|61.1|72/75|Fer2_2| RP:PFM:REP 204->363|PF00941|2e-19|32.5|160/171|FAD_binding_5| RP:PFM:REP 374->473|PF03450|3e-18|49.5|99/102|CO_deh_flav_C| HM:PFM:NREP 4 HM:PFM:REP 201->364|PF00941|8.3e-51|36.6|164/171|FAD_binding_5| HM:PFM:REP 373->473|PF03450|1.6e-38|50.5|101/103|CO_deh_flav_C| HM:PFM:REP 84->158|PF01799|1e-31|54.1|74/75|Fer2_2| HM:PFM:REP 21->55|PF00111|2.6e-06|32.4|34/77|Fer2| GO:PFM:NREP 5 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01799|IPR002888| GO:PFM GO:0046872|"GO:metal ion binding"|PF01799|IPR002888| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01799|IPR002888| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00941|IPR002346| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00941|IPR002346| RP:SCP:NREP 4 RP:SCP:REP 5->89|1dgjA2|3e-13|38.2|76/80|d.15.4.2| RP:SCP:REP 92->163|1ffuA1|5e-31|45.8|72/76|a.56.1.1| RP:SCP:REP 204->363|1rm6B2|2e-27|27.2|158/216|d.145.1.3| RP:SCP:REP 367->477|1jroA3|5e-28|52.8|108/117|d.87.2.1| HM:SCP:REP 2->89|1fo4A2|1.6e-18|39.8|88/90|d.15.4.2|1/1|2Fe-2S ferredoxin-like| HM:SCP:REP 84->214|1dgjA1|6.7e-39|45.0|111/113|a.56.1.1|1/1|CO dehydrogenase ISP C-domain like| HM:SCP:REP 157->367|1fo4A6|7e-60|36.5|211/223|d.145.1.3|1/1|FAD-binding domain| HM:SCP:REP 368->482|1fo4A4|4.7e-37|47.0|115/117|d.87.2.1|1/1|CO dehydrogenase flavoprotein C-terminal domain-like| OP:NHOMO 1901 OP:NHOMOORG 552 OP:PATTERN 226-2-4544446645--32211-2---2--------------------------------2------ 13914---------1--11-12--571111143333136C311311---11-2121----1-C-34A566--------1---6---1--------------1-245-5----------------------------33311----9-1-111---------------1-2--------------32-------1-----1---------23---1----31-----------1--------------------1----------------------------------------------------------------------75-25555455545-4------31-21-113-311454-324-------4--4232-----24IJM423395C6111111111-1-BAG98EBD582-62241184319E7523-87144446594444444463331621------------------------------2341-55445BBBBBA22221BBDB22221285JEEG4-2775433118251A2131-1111-----------3211-4-4111131111--2224111411-133-5-------------------------222--4112-4-112222232111111--1-1----1---------1--2--3332322132-3333222323322332331------------------------52--2222-----------------------------321---------------1111111-214166663284464553433---------1---3----------1122222----------3--------------1----------------------------4433-----13- ----111-----11-21222121121222233211111111112222211122211111111-----------1-----------------11-------1-1----262F23223822222426E252352-32412124226212221B2192624426N287496AD8B356-13-8---2244682751121112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 488 STR:RPRED 99.8 SQ:SECSTR ccccEEEEETTEEEEEccccTTccHHHHHHHHccccccccccccccccTTEEEEEEEccccEEEEEEETTcccGGGGTTcEEEcGGGTccTTccccHHHHHHHHTTcccccccHHHHHHHHHHHHHHcccccHHHHTTcGGGccccccccHHHHHHHHTTccccccccccGGGcccccTHHHHcTTcccccEEEEccccEEEEcccHHHHHHHHHHcTTcEEccccTTHHHHHHHccccccEEEEccccGGGccEEEcccEEEEETTccHHHHHHHHHHHHHHHHHHHTTcccHHHHTTccHHHHHHcccTTcccHHHHHHHTcccEEEcTTccccccccTTccccTTcccccTcEETcEEEEEEEEcccTTEEEEEEEEccccccEEEEEEEEccTcccccEEEEEEETcccccEEcTHHHHHHTTccccHHHHHHHHHHHHHHTcccTcTTccHHHHHHHHHHHHHHHHHHHHTTTTcccccccHH# DISOP:02AL 481-489| PSIPRED ccEEEEEEEccEEEEcccccccccHHHHHHHHcccccccccccccccEEEEEEEccccccccEEEEHHHHHHHHHHHcccEEEEEEccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccccccHHccHHHHcccccccEEEEccccEEEccccHHHHHHHHHcccccEEEEccccHHHHHHccccccccEEEccccccccEEEEcccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHcccccHHHHHHHHHHcccEEEEEccccEEEEEHHHHHHHccccccccccEEEEEEEEcccccccEEEEEEcccccccccEEEEEEEEEEccccEEEEEEEEEEccccccEEHHHHHHHHHcccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc //