[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : xdhB
DDBJ      :xdhB         xanthine dehydrogenase C-terminal subunit
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  347/915 : Eukaryota  143/199 : Viruses  0/175   --->[See Alignment]
d.133.1d.41.1
:750 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->746 1jroB PDBj 0.0 53.4 %
:RPS:PDB   2->746 3b9jC PDBj 0.0 42.8 %
:RPS:SCOP  2->110 1fiqC1  d.41.1.1 * 1e-26 36.4 %
:RPS:SCOP  113->746 1fiqC2  d.133.1.1 * e-168 44.3 %
:HMM:SCOP  2->111 1fo4A3 d.41.1.1 * 5.7e-33 48.1 %
:HMM:SCOP  110->751 1jroB2 d.133.1.1 * 4.8e-203 39.8 %
:RPS:PFM   2->109 PF01315 * Ald_Xan_dh_C 8e-17 42.1 %
:RPS:PFM   132->674 PF02738 * Ald_Xan_dh_C2 2e-98 43.8 %
:HMM:PFM   130->676 PF02738 * Ald_Xan_dh_C2 2.9e-170 41.9 528/543  
:HMM:PFM   2->110 PF01315 * Ald_Xan_dh_C 1e-30 47.2 108/111  
:BLT:SWISS 3->740 XDH_CHICK e-151 44.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88053.2 GT:GENE xdhB GT:PRODUCT xanthine dehydrogenase C-terminal subunit GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2286728..2288980 GB:FROM 2286728 GB:TO 2288980 GB:DIRECTION + GB:GENE xdhB GB:PRODUCT xanthine dehydrogenase C-terminal subunit GB:PROTEIN_ID AAK88053.2 GB:DB_XREF GI:159140424 GB:GENE:GENE xdhB LENGTH 750 SQ:AASEQ MTGSAEYIDDIPEPAGLVHGALGLADRAHAEIVSMDLSEVEATPGVLWVMVGKDVPGENDVSSGGRHDEPLLAETKVEFHGQPIFAVFAETRDIARKAARKAKITYRDLPHFTDIDTAIENGGALVIDPMTLKRGDAKIEMDVAPRRLTGTMRIGGQEHFYLESHIAMAVPGEDDEVTLWSSTQHPSEIQHIVSHILQVPSNAVTVQVRRMGGGFGGKETQGNQFAALCAIAAKKLNRAVKIRPDRDEDMTATGKRHDFRVDYELGFDEEGRIHAVDATYAARCGFSSDLSGPVTDRALFHADSSYFYPHVHLTSRPLKTHTVSNTAFRGFGGPQGMLGAERFIEEIAYAVGKDPLDIRKLNFYGETGSGRTTTPYHQEVEDNIIARVVEELETSSDYRARREAIIEFNRTSPIIRKGIALTPVKFGISFTMTAFNQAGALVHIYNDGSIHLNHGGTEMGQGLYTKVAQVVADAFQVDIGRVKITATTTGKVPNTSATAASSGTDLNGMAAYDAARQIRERLVKFAAENWNVPEEEVVFLPNRVRIGLEEIAFNDFIKKAYFARVQLSAAGFYKTPKIHWDRAAGRGTPFYYFAYGAACSEVSIDTLTGEYMMERTDILHDVGKSLNPAIDIGQIEGAFVQGMGWLTTEELWWDGKGRLRTHAPSTYKIPLASDRPKSFNVKLAEWAENAEPTIGRSKAVGEPPFMLAISVLEALSMAVASVADYKVCPRLDAPATPERVLMAVERLKKV GT:EXON 1|1-750:0| BL:SWS:NREP 1 BL:SWS:REP 3->740|XDH_CHICK|e-151|44.1|710/1358| SEG 95->103|arkaarkak| SEG 467->478|vaqvvadafqvd| BL:PDB:NREP 1 BL:PDB:REP 1->746|1jroB|0.0|53.4|740/760| RP:PDB:NREP 1 RP:PDB:REP 2->746|3b9jC|0.0|42.8|718/758| RP:PFM:NREP 2 RP:PFM:REP 2->109|PF01315|8e-17|42.1|107/110|Ald_Xan_dh_C| RP:PFM:REP 132->674|PF02738|2e-98|43.8|505/519|Ald_Xan_dh_C2| HM:PFM:NREP 2 HM:PFM:REP 130->676|PF02738|2.9e-170|41.9|528/543|Ald_Xan_dh_C2| HM:PFM:REP 2->110|PF01315|1e-30|47.2|108/111|Ald_Xan_dh_C| GO:PFM:NREP 4 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01315|IPR000674| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01315|IPR000674| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02738|IPR008274| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02738|IPR008274| RP:SCP:NREP 2 RP:SCP:REP 2->110|1fiqC1|1e-26|36.4|107/124|d.41.1.1| RP:SCP:REP 113->746|1fiqC2|e-168|44.3|609/621|d.133.1.1| HM:SCP:REP 2->111|1fo4A3|5.7e-33|48.1|108/0|d.41.1.1|1/1|CO dehydrogenase molybdoprotein N-domain-like| HM:SCP:REP 110->751|1jroB2|4.8e-203|39.8|638/654|d.133.1.1|1/1|Molybdenum cofactor-binding domain| OP:NHOMO 1460 OP:NHOMOORG 512 OP:PATTERN 223-1-5577778778--21111-2---1--------------------------------1------ 1-422---------1--11-12--561111133222-368131311---11-2121------A-138355--------1---4------------------1-1-4-2----------------------------32233----A-1-1-1---------------1-2--------------22-------1-----1---------12---1----21-----------1--------------------1----------------------------------------------------------------------64-24444344434-5------31-21-112-212332-3-4-------1--1111------1ABC312574951211-11-111-55843A78672-52231193217932-1-7612222446222222226111-321--------------------------------2--3212254444611111447711111132B6773--44221211323-62-2-----------------11-1-3-4111121111--1112-113-1--11-3-------------------------222--1--1-1---1-11112---------------1---------1--2--3332322232-3333212323323332331------------------------21--1112-----------------------------121---------------1112111-211133332121222233323-------------3----------1122222----------2--------------1----------------------------2322-----12- ----111-----11-21222121121222232211111111112221211122211111111-----------1-----------------11-------1-1----274B23234C22222625D2524B2-32422225226222222D22A2624526O2A83A69D8B374-13-A---2357C72751131112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 746 STR:RPRED 99.5 SQ:SECSTR HTTccccGGGccccTTcEEEEEEEcccccEEEEEEEcTTGGGcTTEEEEEcGGGcccccEEcTTTTccEEcccccEEccTTcEEEEEEEccHHHHHHHHTTcEEEEEEccccccHHHHHHHTcccccccEEEEEccHHHHTTTccEEEEEEEEEcccccccccccEEEEEEccTTcEEEEEccccHHHHHHHHHHHHTccGGGEEEEEccccccTTTTccTTHHHHHHHHHHHHHHcccEEEEccHHHHHHHccccccEEEEEEEEEcTTccEEEEEEEEEEEEEcccTTHHHHHHHHHTTTTTTcccccEEEEEEEEEcccccccccTTTTHHHHHHHHHHHHHHHHHHTTccHHHHHHHHcccTccccTcccTTccccccccHHHHHHHHHHHTTHHHHHHHHHHHHHHcccEEEEEEEEEEEEEEccccGGGcEEEEEEEEcTTccEEEEEccccccccHHHHHHHHHHHHHTccGGGEEcccEETTTccccccccTTTHHHHHHHHHHHHHHHHHHHHHHHHHHcTTccHHHHHHcccEEEHHHHTccHHHHHHHHHHTTcccEEEEEEEcccccccTTTTccccccEEEEEEEEEEEEEETTTccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHTccccccTTcccccccTTTcccccGGGcccEEEEEEccccccTTTcGGGccccccGGGGGGHHHHHHHHHHHHHHHHHHTcccccccccHHHHHHHccc#### DISOP:02AL 750-751| PSIPRED cccEEEEEEccccccccEEEEEEEcccccEEEEEEcHHHHHHcccEEEEEEHHHcccccccccccccccccccccEEEEcccEEEEEEEccHHHHHHHHHHccEEEccccccccHHHHHHccccccccccccccccHHHHHHHccEEEEEEEEEccEEcccccccEEEEEEccccEEEEEEccccHHHHHHHHHHHHcccHHHEEEEEcccccccccccccccHHHHHHHHHHHHHcccEEEEEcHHHHHHHccccccEEEEEEEEEcccccEEEEEEEEEEcccccccccccHHHHHHHHcccccccccEEEEEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccccEEEEcccHHHHHHHHHHHHccHHHHHHHHHHHHHcccccEEEEEEEEEEEccccccccccccEEEEEEccccEEEEEEccccccccHHHHHHHHHHHHHcccHHHEEEEEccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHEEEEccEEEEccccccHHHHHHHHcccccccccEEEcccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccHHHcccccHHHcccEEEEEEEEccccccccccccccccccHHHcccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHcc //