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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : xynA
DDBJ      :xynA         endo-1,4-beta-xylanase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  78/915 : Eukaryota  56/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:355 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   40->341 3emcA PDBj 4e-34 35.6 %
:RPS:PDB   38->342 2depA PDBj 6e-17 27.6 %
:RPS:SCOP  39->342 1b30A  c.1.8.3 * 1e-56 27.4 %
:HMM:SCOP  21->351 1us3A2 c.1.8.3 * 5.1e-75 35.1 %
:RPS:PFM   38->342 PF00331 * Glyco_hydro_10 1e-39 37.9 %
:HMM:PFM   34->346 PF00331 * Glyco_hydro_10 2.5e-69 33.4 299/320  
:HMM:PFM   3->26 PF10518 * TAT_signal 0.00028 37.5 24/26  
:BLT:SWISS 40->341 XYNB_PAEBA 1e-33 35.6 %
:PROS 259->269|PS00591|GLYCOSYL_HYDROL_F10
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88110.2 GT:GENE xynA GT:PRODUCT endo-1,4-beta-xylanase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2344447..2345514) GB:FROM 2344447 GB:TO 2345514 GB:DIRECTION - GB:GENE xynA GB:PRODUCT endo-1,4-beta-xylanase GB:PROTEIN_ID AAK88110.2 GB:DB_XREF GI:159140445 GB:GENE:GENE xynA LENGTH 355 SQ:AASEQ MRIGRRNFLGGAASAGLLHAVAGPAFAAQKKAAIKTAPYGAAIYLPDLTADSRIGEAVVKYCSRITPVTEMKWEVMRPSAEVFDFAAADALANFARQHKLSMHGHPLIWYASNAPWLASVGGAKVEKLMETHIVTVMERYKDVIHSWDVVNEPIPDVPGNVRARRDAWYYGAGPDAIKKAFDIAHAVDPKAQLVLNEYDVEFAVEKSPAKRAAFRNLILELLEKGAPINAVGLQGHLRGGWPIAKDELAAFTTEMRSYGLAVMVTELDVMDQTLPTPEAERDMLITGQVREFLEAASAGGPLSSITTWGISDQYSWIRWAYPRRDGTANRPLPLDWSFNEKPMMAVINEFRNRGA GT:EXON 1|1-355:0| BL:SWS:NREP 1 BL:SWS:REP 40->341|XYNB_PAEBA|1e-33|35.6|284/332| PROS 259->269|PS00591|GLYCOSYL_HYDROL_F10|PDOC00510| SEG 9->37|lggaasagllhavagpafaaqkkaaikta| SEG 83->95|fdfaaadalanfa| BL:PDB:NREP 1 BL:PDB:REP 40->341|3emcA|4e-34|35.6|284/331| RP:PDB:NREP 1 RP:PDB:REP 38->342|2depA|6e-17|27.6|294/340| RP:PFM:NREP 1 RP:PFM:REP 38->342|PF00331|1e-39|37.9|277/294|Glyco_hydro_10| HM:PFM:NREP 2 HM:PFM:REP 34->346|PF00331|2.5e-69|33.4|299/320|Glyco_hydro_10| HM:PFM:REP 3->26|PF10518|0.00028|37.5|24/26|TAT_signal| GO:PFM:NREP 2 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF00331|IPR001000| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00331|IPR001000| RP:SCP:NREP 1 RP:SCP:REP 39->342|1b30A|1e-56|27.4|274/302|c.1.8.3| HM:SCP:REP 21->351|1us3A2|5.1e-75|35.1|325/0|c.1.8.3|1/1|(Trans)glycosidases| OP:NHOMO 346 OP:NHOMOORG 135 OP:PATTERN -----------------------------2-------------------------------------- 1-3-4-----------------------------------2---312-431--1----------41-22-2--------------------1-------1-3---111------------------------------------1----1-----11--------1-112------------------12-1------------------1--1------2-----------5------------------------------------------------------------------------------------------5--------------4-------5-2--------------------6-----12223-----1-1----1-1----------------------1-----11-11-111----2-------------------------------------------------------------------------------------------------------------------------------------------------------------------6----------------------------------4--1-----------------------------------------------------------------------------------------------------------------------------------------------------------------4---------------11--------------------------12122-------------------------------------------------------1--31232-6- ------1--------127423424244-------------------2212543544653444------------1--------------632245------21-----2-5----------------------------------------------------A5--------1-----------2342441116365- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 316 STR:RPRED 89.0 SQ:SECSTR #####################################cEEEEEcGGGccHHHHHHHHHHHHccEEEEccTTcHHHHcccTTccccHHHHHHHHHHHHTTcEEEEEEEEEcccccGGGGccTTcccGHHHHHHHHHHHHHHTTTccEEEEEEcccccTTcGGGccccHHHHHHTTHHHHHHHHHHHHHHccccEEEEEEccTTcccTcHHHHHHHHHHHHHHHHTTccccEEEEccEEEccccccHHHHHHHHHHHHTTTcEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHTTGGGEEEEEEccccTTccGGGGTccccccGGcccccccTTccccHHHHHHHHHHHH## DISOP:02AL 1-3,354-356| PSIPRED ccccHHHHHccccHHHHHHHHHHccHHHHHHHHcccccEEEEEcHHHccccHHHHHHHHHHccccccccccccHHcccccccccHHHHHHHHHHHHHcccEEEEEEEEccccccHHHHcccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccccccccccccHHHHHHcHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEccEEccccccccccccccccccccEEEcccccccHHHHHHHHHHcccc //