[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Bacteriophage 44RR2.8t (bp441)
Gene : 41
DDBJ      :41           DNA primase-helicase subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  5/915 : Eukaryota  0/199 : Viruses  9/175   --->[See Alignment]
a.81.1c.37.1d.218.1
:469 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   179->383 2vyeA PDBj 2e-06 22.7 %
:RPS:PDB   3->93 1b79B PDBj 7e-06 17.0 %
:RPS:PDB   172->412 3bs4A PDBj 2e-11 11.8 %
:RPS:SCOP  5->93 1b79A  a.81.1.1 * 3e-06 17.4 %
:RPS:SCOP  305->394 2o5aA1  d.218.1.12 * 8e-05 25.3 %
:HMM:SCOP  168->429 1n0wA_ c.37.1.11 * 5.2e-26 23.2 %
:RPS:PFM   172->358 PF03796 * DnaB_C 3e-07 25.7 %
:HMM:PFM   179->358 PF03796 * DnaB_C 6.8e-17 25.4 173/185  
:HMM:PFM   5->59 PF00772 * DnaB 0.00015 21.8 55/103  
:BLT:SWISS 1->469 VG41_BPT4 e-153 57.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAQ81351.1 GT:GENE 41 GT:PRODUCT DNA primase-helicase subunit GT:DATABASE AY375531 GT:ORG bp441 GB:ACCESSION AY375531 GB:LOCATION complement(17573..18982) GB:FROM 17573 GB:TO 18982 GB:DIRECTION - GB:GENE 41 GB:PRODUCT DNA primase-helicase subunit GB:NOTE DNA primase-helicase ATPase, dATPase, GTPase, dGTPase for replication and recombination; similar to T4 accession NP_049654.1; Glimmer predicted start chosen to improve alignment of N-term with other T4-like sequences; GeneMarkS predicts start at 18877; gp41 GB:PROTEIN_ID AAQ81351.1 GB:DB_XREF GI:34732813 GB:GENE:GENE 41 LENGTH 469 SQ:AASEQ MVETILENLLFNNTYFISAYPYLKDEYFDRGPYRELFKLIQKHVNEYNTIPTKTALVIALEKKSVDQLTHDGIKEVLGRLASKPEDHSWLIKETESYCKDQAMYNALSKAIEIQENAAKPFEERNKKLPDVGAIEDLMKNALAISFDGSVGHDWFEDYERRYMLYMSKANKIPFVSHILNKITKGGAEVGTLNVIMAGVNVGKSLGLCSLAADYLQTGKNVVYFSMEMAEHVVAKRIDANLLDVTLDEIDDGQLSFAEYKARMEKLKSRNMGRLIIKQYPTSGANANHFNAFLNELKLKKNFKADIVIVDYLGICASTRLGGGTENSYSFVKAIAEELRGLAVQHQVVLWTGAQTNRGAWDSTDIDMSDVAESAGLPATADFMLAVMETEELAQLGVQLFKQIKSRYGDKNYINKFRMGVRKGNQRWYDLEEEGQSAPKPGAAPARQADHTKGSNNREKLDELAGIMNF GT:EXON 1|1-469:0| BL:SWS:NREP 1 BL:SWS:REP 1->469|VG41_BPT4|e-153|57.1|469/475| SEG 289->304|fnaflnelklkknfka| BL:PDB:NREP 1 BL:PDB:REP 179->383|2vyeA|2e-06|22.7|198/424| RP:PDB:NREP 2 RP:PDB:REP 3->93|1b79B|7e-06|17.0|88/103| RP:PDB:REP 172->412|3bs4A|2e-11|11.8|229/245| RP:PFM:NREP 1 RP:PFM:REP 172->358|PF03796|3e-07|25.7|179/184|DnaB_C| HM:PFM:NREP 2 HM:PFM:REP 179->358|PF03796|6.8e-17|25.4|173/185|DnaB_C| HM:PFM:REP 5->59|PF00772|0.00015|21.8|55/103|DnaB| GO:PFM:NREP 3 GO:PFM GO:0003678|"GO:DNA helicase activity"|PF03796|IPR007694| GO:PFM GO:0005524|"GO:ATP binding"|PF03796|IPR007694| GO:PFM GO:0006260|"GO:DNA replication"|PF03796|IPR007694| RP:SCP:NREP 2 RP:SCP:REP 5->93|1b79A|3e-06|17.4|86/102|a.81.1.1| RP:SCP:REP 305->394|2o5aA1|8e-05|25.3|75/108|d.218.1.12| HM:SCP:REP 168->429|1n0wA_|5.2e-26|23.2|228/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 17 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1----------------------------------------------------------------------------------------------------------------------------------------------------------32---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---1-1-------------1---11----------111-1--------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 362 STR:RPRED 77.2 SQ:SECSTR ##HHHHHHHHHcGGGHHHHHTTccGGGcccHHHHHHHHHHHHHHHTTccc###cHHHHHHHHHTTTTHHHHTHHHHHHHHHHHcHHHHHHHHc###########################################HHHHHHHHHEEEEEETTEEEEccTTcccccccccccccccHHHHHHHccccTTcEEEEEEccGGGcHHHHHHHHHHHHHHTTcEEEEEEccccHHHHHHHHHHTTccHHcHHHHTTcEEEEcHHHHHHHHHHHHHTccTTEEcccccccTTT#HHHHHHHHHHHHHHHHHHHHTTccTTccEEEEEETGGGGGGTccHHHHHHHHHHHHHHHHHcHHHHcccccEEEEEccccHHHHHHHHHHccEEE#EEEEEEETTEEEEEEEEEEccccEEEE######################################################### DISOP:02AL 143-145,317-331,359-368,431-457| PSIPRED cHHHHHHHHHHcHHHHHHHHHHccHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccHHHccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHccccHHHHHcccccHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHcccccEEEEccHHHEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHcccccHHHHccEEEEEEcccccccccEEEEEEEcccccccccEEEEEEEEEccccEEcccccccccccccccccHHcccHHHHcccHHHHHHHHHHccc //