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Bacteriophage 44RR2.8t (bp441)
Gene : 42
DDBJ      :42           dCMP hydroxymethylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  38/915 : Eukaryota  0/199 : Viruses  2/175   --->[See Alignment]
d.117.1
:231 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->228 1b5eA PDBj 1e-70 55.6 %
:RPS:PDB   7->223 1axwA PDBj 2e-46 24.6 %
:RPS:SCOP  7->223 1aiqA  d.117.1.1 * 1e-39 23.2 %
:HMM:SCOP  1->231 1b5eA_ d.117.1.1 * 1.2e-64 27.3 %
:RPS:PFM   9->226 PF00303 * Thymidylat_synt 1e-12 27.9 %
:HMM:PFM   10->226 PF00303 * Thymidylat_synt 7.5e-29 25.6 207/266  
:BLT:SWISS 4->228 DCHM_BPT6 3e-70 55.6 %

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAQ81353.1 GT:GENE 42 GT:PRODUCT dCMP hydroxymethylase GT:DATABASE AY375531 GT:ORG bp441 GB:ACCESSION AY375531 GB:LOCATION complement(19291..19986) GB:FROM 19291 GB:TO 19986 GB:DIRECTION - GB:GENE 42 GB:PRODUCT dCMP hydroxymethylase GB:NOTE produces modified hydroxymethylcytosine in T4 DNA; similar to T4 accession NP_049659.1; gp42 GB:PROTEIN_ID AAQ81353.1 GB:DB_XREF GI:34732815 GB:GENE:GENE 42 LENGTH 231 SQ:AASEQ MLYMNTQNIRDILAQRFAAGEFVTDKTGVKTIEIAPVMFKADEPLIFGKLNNDYIERELAWYLSQSRYVHDIPGKTPVIWEAVSDSEGRINSNYGWAILSDENGSQFANVLMHLASDPNTRRANMIYTRPTMHEDYKANGMSDFMCTNNVQYQIRDGKLNAVVHMRSNDAIFGYRNDWAWQDYVLKRLVDKLQSREVMVEKGDIYWCVDSIHVYERHFPMIEKYIATGSIE GT:EXON 1|1-231:0| BL:SWS:NREP 1 BL:SWS:REP 4->228|DCHM_BPT6|3e-70|55.6|225/246| BL:PDB:NREP 1 BL:PDB:REP 4->228|1b5eA|1e-70|55.6|225/241| RP:PDB:NREP 1 RP:PDB:REP 7->223|1axwA|2e-46|24.6|203/264| RP:PFM:NREP 1 RP:PFM:REP 9->226|PF00303|1e-12|27.9|204/264|Thymidylat_synt| HM:PFM:NREP 1 HM:PFM:REP 10->226|PF00303|7.5e-29|25.6|207/266|Thymidylat_synt| GO:PFM:NREP 2 GO:PFM GO:0004799|"GO:thymidylate synthase activity"|PF00303|IPR000398| GO:PFM GO:0006231|"GO:dTMP biosynthetic process"|PF00303|IPR000398| RP:SCP:NREP 1 RP:SCP:REP 7->223|1aiqA|1e-39|23.2|203/265|d.117.1.1| HM:SCP:REP 1->231|1b5eA_|1.2e-64|27.3|231/241|d.117.1.1|1/1|Thymidylate synthase/dCMP hydroxymethylase| OP:NHOMO 41 OP:NHOMOORG 40 OP:PATTERN -------------------------------------------------------------------- ------------------------1-----------1-------111----1111--1--------------111------------------------1-------1--------------------------------------------------------------------------------------------------------------------1-------------------------------------------------1-------------------------------------------------------------------------1---------1-----------------1--------1----------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-----------------2----------------------------------1-1------------------------------------------1---111111111------------------------------1--------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------------------------1---1--------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 228 STR:RPRED 98.7 SQ:SECSTR ccccHHHHHHHHHHHcccccEEEccTTcccEEEEEEEEEEEEGGGccccccHHHHHHHHHHHHHTcccTHHHHHTTccTTGGGccTTccccccHHEEcTTccEEcHHHHHHHHHHHcTTccccEcEEEcccGGGGGcGGGccccccEEEEEEEEETTEEEEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHHHHHTTcEEEEEEEEEEEEEEEGGGHHHHHHHHTHc### DISOP:02AL 229-232| PSIPRED cccccHHHHHHHHHHHHHccEEccccccccEEEEEccEEEEEcccccccccHHHHHHHHHHHHcccccHHHHHHHcccEEcccccccccccccccccccccccccHHHHHHHHHHccccccEEEEEEEcccHHHccccccccccccEEEEEEEEEccEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEEEEcHHHHHHHHHHHHccccc //