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Bacteriophage 44RR2.8t (bp441)
Gene : 43
DDBJ      :43           DNA polymerase, N-terminal fragment
Swiss-Prot:             

Homologs  Archaea  24/68 : Bacteria  105/915 : Eukaryota  26/199 : Viruses  9/175   --->[See Alignment]
c.55.3e.8.1
:498 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->497 1ih7A PDBj e-134 48.2 %
:RPS:PDB   3->497 2dtuA PDBj 4e-53 45.1 %
:RPS:SCOP  3->361 2p5oD1  c.55.3.5 * 4e-99 45.4 %
:RPS:SCOP  363->487 1clqA2  e.8.1.1 * 3e-15 62.4 %
:HMM:SCOP  2->362 1noyA_ c.55.3.5 * 2.7e-69 24.3 %
:HMM:SCOP  362->498 1clqA2 e.8.1.1 * 8.2e-29 29.9 %
:RPS:PFM   119->215 PF03104 * DNA_pol_B_exo 1e-06 34.1 %
:RPS:PFM   371->475 PF00136 * DNA_pol_B 2e-07 39.6 %
:HMM:PFM   67->279 PF03104 * DNA_pol_B_exo 8e-29 25.5 188/317  
:HMM:PFM   354->483 PF00136 * DNA_pol_B 4.8e-14 25.2 127/467  
:BLT:SWISS 4->489 DPOL_BPT4 e-136 49.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAQ81355.1 GT:GENE 43 GT:PRODUCT DNA polymerase, N-terminal fragment GT:DATABASE AY375531 GT:ORG bp441 GB:ACCESSION AY375531 GB:LOCATION complement(21221..22717) GB:FROM 21221 GB:TO 22717 GB:DIRECTION - GB:GENE 43 GB:PRODUCT DNA polymerase, N-terminal fragment GB:NOTE core DNA polymerase of phage replisome, 3'-5' exonuclease; gp43 GB:PROTEIN_ID AAQ81355.1 GB:DB_XREF GI:34732817 GB:GENE:GENE 43 LENGTH 498 SQ:AASEQ MRHYTNIEIIGNNIMERFVDNGKRQTRKVAYQPTLFQHAAPGVQTKHKDIYGRFCVPKKHENIWEAKQWIKRMEEVGMDAMGMDDYGISYISDTYRGVIDFDRDDVVIDVVDIEVTAPEFPEPKYAKYEIDMISHVRLHNGKKTYYIFDLVKDVGHWDPKKSVLEKYILDNVVYMPFEDEVDLLLNYIQLWKANTPDLVFGWNSEGFDIPYIITRITNILGEKAANQLSPYGKITSKTITNLYGEKIIYKIHGIALMDYMDVFKKFSFTPMPDYKLGNVGYREVKADKLDYEGPINKFRKADHQRYVDYCVRDTDIILLIDGRRCFIDLILSLSYYAKIRFDDVLGTIKVWDSIIFNSLVESNVVIPAMKASPKQSFPGAYVKEPVPGGYRYGLSFDLTSLYPSILRLLNISPEMIAGMFSPARLEDYINKVAPRPSDQFSCAPNGMMYKKGVVGVLPNETEKVFLQRKSEKKMMLAAIRNQEAIKKILASRGVKLDH GT:EXON 1|1-498:0| BL:SWS:NREP 1 BL:SWS:REP 4->489|DPOL_BPT4|e-136|49.0|482/898| SEG 98->115|vidfdrddvvidvvdiev| BL:PDB:NREP 1 BL:PDB:REP 4->497|1ih7A|e-134|48.2|492/897| RP:PDB:NREP 1 RP:PDB:REP 3->497|2dtuA|4e-53|45.1|488/896| RP:PFM:NREP 2 RP:PFM:REP 119->215|PF03104|1e-06|34.1|85/304|DNA_pol_B_exo| RP:PFM:REP 371->475|PF00136|2e-07|39.6|96/391|DNA_pol_B| HM:PFM:NREP 2 HM:PFM:REP 67->279|PF03104|8e-29|25.5|188/317|DNA_pol_B_exo| HM:PFM:REP 354->483|PF00136|4.8e-14|25.2|127/467|DNA_pol_B| GO:PFM:NREP 6 GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF03104|IPR006133| GO:PFM GO:0006260|"GO:DNA replication"|PF03104|IPR006133| GO:PFM GO:0000166|"GO:nucleotide binding"|PF00136|IPR006134| GO:PFM GO:0003677|"GO:DNA binding"|PF00136|IPR006134| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00136|IPR006134| GO:PFM GO:0006260|"GO:DNA replication"|PF00136|IPR006134| RP:SCP:NREP 2 RP:SCP:REP 3->361|2p5oD1|4e-99|45.4|282/286|c.55.3.5| RP:SCP:REP 363->487|1clqA2|3e-15|62.4|125/528|e.8.1.1| HM:SCP:REP 2->362|1noyA_|2.7e-69|24.3|358/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 362->498|1clqA2|8.2e-29|29.9|137/0|e.8.1.1|1/1|DNA/RNA polymerases| OP:NHOMO 166 OP:NHOMOORG 164 OP:PATTERN -----1---------1-----11-11111111-----------11111-1-11--------111-1-- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------1--1-1-----11---------1-------------------11------------------------------------------------------------------------------------1-11-11-1111111-111-11-1---------------------1-1111111111-11-1111111111111111111-----1--111111-1-1-11-11-1111---11111111111---------------1-1--------------------------------1---1111--------------111-111111--11------------------------------------------------------------------------- 1---1---11----------111-1---------------------------------------1---------------------1---------------11-11----------------------------------------------------13--11------111---------1----------1111- ---1-1-------------1---11----------111-1--------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 497 STR:RPRED 99.8 SQ:SECSTR #cEEEEEEEETTEEEEEEEcTccEEEEEEccccEEEEEccTTccccEEETTccEEEEEEcccHHHHHHHHHHHHHHTccccccccHHHHHHHHHTcccccccGGGccEEEEEEEccccccccTTTccccccEEEEEETTTTEEEcccccHHHHHccGGGTcccccTTTGGGEEEEEEccHHHHHHHHHHHHHHTcccEEEcccTTTTHHHHHHHHHHHHccHTTTGGGcHHHGGGcTTccEEEcccccEEETTcEEccHHHHHHHHcccccccccHHHHHHHHHccccccccccGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHTccGGGGGcHHHHHHHHHHHHHHHTTEEccccccccccccccccccccccEEcccEEEEEEccHHHHHHHHHTccGGGEEEEcccccHHHHHTTcccccccccEEETTTEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTcccccccc DISOP:02AL 370-376,497-499| PSIPRED cEEEEEEEEEccEEEEEEEccccEEEEEEccccEEEEEcccccccccEEccccccccEEcccHHHHHHHHHHHHHcccccccccccEEEEHHHHHHcccccccccEEEEEEEEEEcccccccccccccEEEEEEEEEEEcccccEEEEEEEccccccccccccccHHccccEEEEEcccHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHcccccHHccccccccccccccccccccEEEEEccEEEHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHcccEEEEEEHHHHHHHHccEEcccccccccccccccEEEccccccccccEEEEEHHHHHHHHHHHcccHHHHcccccccccccccccccccccccEEEcccccEEEccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccc //