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Bacteriophage 44RR2.8t (bp441)
Gene : 45
DDBJ      :45           DNA polymerase accessory protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  0/915 : Eukaryota  0/199 : Viruses  9/175   --->[See Alignment]
d.131.1
:223 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->223 1b77A PDBj 7e-50 43.5 %
:RPS:PDB   1->223 1czdA PDBj 6e-44 40.8 %
:RPS:SCOP  1->109 1b77A1  d.131.1.2 * 7e-41 46.8 %
:HMM:SCOP  1->109 1czdA1 d.131.1.2 * 8.4e-40 56.9 %
:HMM:SCOP  110->223 1czdA2 d.131.1.2 * 8.7e-40 50.0 %
:RPS:PFM   1->77 PF02916 * DNA_PPF 7e-11 44.2 %
:RPS:PFM   112->222 PF09116 * gp45-slide_C 5e-27 49.1 %
:HMM:PFM   112->223 PF09116 * gp45-slide_C 1.3e-44 48.2 112/112  
:HMM:PFM   1->108 PF02916 * DNA_PPF 6.8e-35 26.9 108/110  
:BLT:SWISS 1->223 DPA5_BPR69 2e-49 43.5 %

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAQ81359.1 GT:GENE 45 GT:PRODUCT DNA polymerase accessory protein GT:DATABASE AY375531 GT:ORG bp441 GB:ACCESSION AY375531 GB:LOCATION complement(24733..25404) GB:FROM 24733 GB:TO 25404 GB:DIRECTION - GB:GENE 45 GB:PRODUCT DNA polymerase accessory protein GB:NOTE sliding clamp; required for synthesis of late RNA; similar to T4 accession NP_049666.1; gp45 GB:PROTEIN_ID AAQ81359.1 GB:DB_XREF GI:34732821 GB:GENE:GENE 45 LENGTH 223 SQ:AASEQ MKLSKETLSIMKNFAAINPSLRLVPGDFIMTKSINGVAYAEATIADEIDSELNIYDLPNFLSILGQLGDGSEITLSNGDIVIHNGRAKVNLPDAEGNAIIVPKQRLRMPPPDVEFDLKAEDLAEILKISRAVGADRMAITNRDDHIVVDTFSEADGDNPRTRYSVQLCAYEGTNNFSFVINLDNVSVVIADYKINISSKGAAQFQGINSSYVFVLETSSKHDF GT:EXON 1|1-223:0| BL:SWS:NREP 1 BL:SWS:REP 1->223|DPA5_BPR69|2e-49|43.5|223/228| BL:PDB:NREP 1 BL:PDB:REP 1->223|1b77A|7e-50|43.5|223/228| RP:PDB:NREP 1 RP:PDB:REP 1->223|1czdA|6e-44|40.8|223/228| RP:PFM:NREP 2 RP:PFM:REP 1->77|PF02916|7e-11|44.2|77/111|DNA_PPF| RP:PFM:REP 112->222|PF09116|5e-27|49.1|110/111|gp45-slide_C| HM:PFM:NREP 2 HM:PFM:REP 112->223|PF09116|1.3e-44|48.2|112/112|gp45-slide_C| HM:PFM:REP 1->108|PF02916|6.8e-35|26.9|108/110|DNA_PPF| GO:PFM:NREP 1 GO:PFM GO:0006260|"GO:DNA replication"|PF02916|IPR004190| RP:SCP:NREP 1 RP:SCP:REP 1->109|1b77A1|7e-41|46.8|109/110|d.131.1.2| HM:SCP:REP 1->109|1czdA1|8.4e-40|56.9|109/110|d.131.1.2|1/1|DNA clamp| HM:SCP:REP 110->223|1czdA2|8.7e-40|50.0|114/118|d.131.1.2|1/1|DNA clamp| OP:NHOMO 9 OP:NHOMOORG 9 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---1-1-------------1---11----------111-1--------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 223 STR:RPRED 100.0 SQ:SECSTR ccccHHHHHHHHHHHHHcccEEEccEEEEEEEcTTccEEEEEEEEEEEcccEEEccHHHHHHHHTTccTTcEEEEcTccEEEEccccEEEEccccGGGccccccccccccccEEEEEcHHHHHHHHHHHHHTTccEEEEEEETTEEEEEEEcGGccccccccEEEEEEEccccccEEEEEEGGGcccccccEEEEETTEEEEEEEcccEEEEEEccTTcEEcc DISOP:02AL 1-3,220-224| PSIPRED ccccHHHHHHHHHHHcccccEEEEcccEEEEEEccccEEEEEEEcccccEEEEEEEcHHHHHHHHHcccccEEEEEccEEEEEcccEEEEEEccccHHEEEcccccccccccEEEEEcHHHHHHHHHHHHHccccEEEEEEEccEEEEEEEccccccccccEEEEEEEcccccccEEEEEEEccEEEEEccEEEEEEHHHHHHHccccEEEEEEEEccccccc //