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Bacteriophage 44RR2.8t (bp441)
Gene : rnlA
DDBJ      :rnlA         RNA ligase 1 and tail fiber attachment catalyst
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  3/915 : Eukaryota  2/199 : Viruses  6/175   --->[See Alignment]
d.142.2
:383 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->382 2c5uA PDBj 2e-68 44.3 %
:RPS:SCOP  73->120 1ckmA2  d.142.2.3 * 4e-04 23.4 %
:HMM:PFM   56->257 PF09511 * RNA_lig_T4_1 2.9e-44 29.4 201/222  
:BLT:SWISS 6->382 RLIG_BPT4 1e-84 45.0 %

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAQ81522.1 GT:GENE rnlA GT:PRODUCT RNA ligase 1 and tail fiber attachment catalyst GT:DATABASE AY375531 GT:ORG bp441 GB:ACCESSION AY375531 GB:LOCATION complement(136334..137485) GB:FROM 136334 GB:TO 137485 GB:DIRECTION - GB:GENE rnlA GB:PRODUCT RNA ligase 1 and tail fiber attachment catalyst GB:FUNCTION tail fiber attachment and RNA ligase for repair of tRNA in restrictive prr hosts, in conjunction with PseT GB:NOTE similar to T4 accession NP_049839.1; T4 gene synonym: 63; RnlA GB:PROTEIN_ID AAQ81522.1 GB:DB_XREF GI:34732985 GB:GENE:GENE rnlA LENGTH 383 SQ:AASEQ MTNITELYDNLMNVVNSSEKGNFFFKDVTTSMGTKARIFSYFIASYSDWLIPGALESRGIMFEITEEGKPVRIMARPMQKFFNLKENPFTMNLDLTKMVGLMEKADGSLISSYHDQGYIFLKSKAAIHSDQANKAMALLNSPAYEKLRERIADSGPGYTFNMEYVGPSNRIVLPYEDEELIVLNVRHNETGEYVNISTLMNDPATRSRMVGVYPSPDWEKITPAEWEAGVRAETDIEGVIGIMDDGQLFKLKTDWYSALHRTKDSINNNKALIQSIKERATDDLRGLFADDAVSIAKIEDFEELYISTISRYHELCFSVYQSLQGKDRRSFAIEAQAKLSDHRYLFSIVMRQYARDWDSEEVIGAIEEHMVKNYDKYTPAKYR GT:EXON 1|1-383:0| BL:SWS:NREP 1 BL:SWS:REP 6->382|RLIG_BPT4|1e-84|45.0|369/374| BL:PDB:NREP 1 BL:PDB:REP 6->382|2c5uA|2e-68|44.3|357/360| HM:PFM:NREP 1 HM:PFM:REP 56->257|PF09511|2.9e-44|29.4|201/222|RNA_lig_T4_1| RP:SCP:NREP 1 RP:SCP:REP 73->120|1ckmA2|4e-04|23.4|47/228|d.142.2.3| OP:NHOMO 12 OP:NHOMOORG 11 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----1--------------------------------------------------------------------------------------------------------2----------------------------------------------------------------------------------------- ---1---------------1---------------111-1--------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 359 STR:RPRED 93.7 SQ:SECSTR #####HHHHHHHHTTccTTcHHEEEEEEEcTTccEEEEEEEccccHHHHTcTTGGGTTTc#EEETTccEEEEEEEccHcccccTTccGGGHcccGGGEEEEEEEcccEEEEEEEETTEEEEEETTccccHHHHHHHHHHcGTGGHHHHHHHHHHHTTEEEEEEEEcTTcccccccc#cEEEEEEEEETTTcccccHHHHHHcTTTGGGcccEE######EcccTHHHHHHHHcccccEEEEE#TTccEEEEEcHHHHHHHHcccGGGcHHHHHHHHHTTcHHHHHH#TTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHTTTGGGHHHH##HHTTccccTTHHHHHHHHHHHccGG####### DISOP:02AL 1-2,262-268,383-384| PSIPRED cccHHHHHHHHHHHHccccccEEEEEEEccccccEEEEEEEEcccHHHccccHHHHHcEEEEEEcccccEEEEEcccHHHHHcccccHHcccccHHHHHHHHHHccccEEEEEEEccEEEEEEcccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEEEccccEEEEEcccccEEEEEEEEcccccEEEHHHccccHHHHHHHHHHcccccccccccHHHHHHHHHHccccEEEEEEccccEEEEccHHEEEEcccccccccHHHHHHHHHccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHccccccc //