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Shigella flexneri bacteriophage V (bpsf1)
Gene : int
DDBJ      :int          integrase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  201/915 : Eukaryota  0/199 : Viruses  7/175   --->[See Alignment]
d.163.1
:387 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   183->371 1aihB PDBj 5e-11 37.1 %
:RPS:PDB   58->359 3c28B PDBj 2e-21 10.3 %
:RPS:SCOP  181->371 1aihA  d.163.1.1 * 1e-30 34.8 %
:HMM:SCOP  179->366 4crxA2 d.163.1.1 * 1.9e-39 28.7 %
:RPS:PFM   195->352 PF00589 * Phage_integrase 4e-11 30.6 %
:HMM:PFM   184->355 PF00589 * Phage_integrase 5e-47 30.4 161/173  
:BLT:SWISS 1->386 VINT_BPP22 0.0 86.3 %

SeqInfo AminoSeq See neighboring genes
Links Genpept Abbreviations Back to title page
GT:ID NP_599058.1 GT:GENE int GT:PRODUCT integrase GT:DATABASE NC_003444 GT:ORG bpsf1 GB:ACCESSION NC_003444 GB:LOCATION complement(20652..21815) GB:FROM 20652 GB:TO 21815 GB:DIRECTION - GB:GENE int GB:PRODUCT integrase GB:PROTEIN_ID NP_599058.1 GB:DB_XREF GI:19549014 GB:GENE:GENE int LENGTH 387 SQ:AASEQ MSLFRRGEIWYASFTLPNGKRFKQSLGTKDKRQATELHDKLKAEAWRVSKLGEIPDITFEEACVRWLEEKAHQKSLDDDKSRIGFWLQHFAGMQLRDITESKIYSAIQKMTNRRHEENWRLRAEACRKKGKPVPEYTPKPASVATKATHLSFIKALLRAAEREWKMLDKAPIIKVPQPKNKRIRWLEPHEAQRLIDECPEPLKSVVEFALATGLRRSNIINLEWQQIDMQRRVAWINPEESKSNRAIGVALNDTACRVLKKQIGNHHRWVFVYKESCTKPDGTKAPTVREMRYDANTAWKAALRRAGIDDFRFHDLRHTWASWLGQAGVPLSVLQEMGGWESIEMVRRYAHLAPNHLTEHARQIDSILNPSVPNSSQSKNKEGTNDV GT:EXON 1|1-387:0| BL:SWS:NREP 1 BL:SWS:REP 1->386|VINT_BPP22|0.0|86.3|386/387| BL:PDB:NREP 1 BL:PDB:REP 183->371|1aihB|5e-11|37.1|159/168| RP:PDB:NREP 1 RP:PDB:REP 58->359|3c28B|2e-21|10.3|292/315| RP:PFM:NREP 1 RP:PFM:REP 195->352|PF00589|4e-11|30.6|147/168|Phage_integrase| HM:PFM:NREP 1 HM:PFM:REP 184->355|PF00589|5e-47|30.4|161/173|Phage_integrase| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 181->371|1aihA|1e-30|34.8|161/170|d.163.1.1| HM:SCP:REP 179->366|4crxA2|1.9e-39|28.7|181/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 304 OP:NHOMOORG 208 OP:PATTERN -------------------------------------------------------------------- -11-----------------------------------------------------------1-------------111----------------------------------------------------------------1----------------------------------------------1---11111-------------------------------------------------------------------------------------------------------------------------------------1---------------1---------11--1------1----1----1-------2-111------1111111111--4122-2-1--1-1--1---1--111-1--1-1--11-1-----------11-31-----------FC--11---1----------3----------1122-21111112-222333--1---2--211-21----1-1-11-2--1-111------1--12-6311--123-21-2--11---12-12-1-13--1----------------------1-----------1-1-1---1--------------1-1--------21--31111-1232-1-1-11--1---11211111311-121--11-111--2--11111-1--431---11----1--1-2--3-------222-1---1--1------11-1-11---2--------1------1----3-----------1------------11--1-1--1----1------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------1--------------------1---------1----1-----1-1---------------------------------------------------------------------------------------1--------------------------------- STR:NPRED 314 STR:RPRED 81.1 SQ:SECSTR #########################################################HHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccGGGcHHHHHHHHHHHHHHHHTTccccccccccHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHcccHHHHHHccGGGEEEcTTccEEEEEcccccccEEEEccHHHHHHHHHHHHHHTGGGcTTccccccccTTccccccccHHHHHHHHHccccccccTTccTTHHHHHHHHHHHHTTccHHHHHHHTTccccHHHHHHHcccHHHHccHHHHHTTcTccc################ DISOP:02AL 176-176,367-388| PSIPRED cEEEEEccEEEEEEEEccccEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEEccccccccEEEEEccHHHHHHHHHHHHHccccEEcccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccccc //