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Shigella flexneri bacteriophage V (bpsf1)
Gene : orf16
DDBJ      :orf16        tail protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  59/915 : Eukaryota  0/199 : Viruses  4/175   --->[See Alignment]
b.106.1
:359 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->339 3cddB PDBj 3e-40 34.1 %
:RPS:PDB   3->341 3d37A PDBj 2e-39 25.5 %
:RPS:SCOP  3->177 3d37A1  b.106.1.1 * 4e-27 27.2 %
:RPS:SCOP  179->343 1wruA1  b.106.1.1 * 5e-49 36.2 %
:RPS:PFM   55->334 PF05954 * Phage_GPD 2e-12 29.3 %
:HMM:PFM   4->334 PF05954 * Phage_GPD 2e-74 27.6 308/332  
:BLT:SWISS 1->349 VPP_BPMU 1e-41 34.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links Genpept Abbreviations Back to title page
GT:ID NP_599048.1 GT:GENE orf16 GT:PRODUCT tail protein GT:DATABASE NC_003444 GT:ORG bpsf1 GB:ACCESSION NC_003444 GB:LOCATION 12995..14074 GB:FROM 12995 GB:TO 14074 GB:DIRECTION + GB:GENE orf16 GB:PRODUCT tail protein GB:NOTE similar to phage Mu tail protein P GB:PROTEIN_ID NP_599048.1 GB:DB_XREF GI:19549006 GB:GENE:GENE orf16 LENGTH 359 SQ:AASEQ MNDNVTLRVNGREWNGWTSVRIGAGIERLARDFSVDITRQWPGDEGITTLQPRIKNGSKVEVLIGDELVITGWVEATPVRYDARSVSTGIAGRSLTADLIDCAAEPTQFNGRSLVQIAQALAAPFGIEVVNNGAPSGVIPDVQPDHGETVIEVINKILGQQQALAYDDPHGRLVIGGIGSTRAHTALVLGENILSCDTEKSIRERFSVYQVAGQRAGNDDDFGEATTTALRARTEDAFIARYRPMYIRQTGQATGAGCIARADFEARQRAARTDETTYVVQGWRQGNGTLWQPNQRVIVFDPVCGFDNTELLVSEVTFTQDQNGTLTEIRVGPPDAYLPEPEAPGARKKKKARVQEDPF GT:EXON 1|1-359:0| BL:SWS:NREP 1 BL:SWS:REP 1->349|VPP_BPMU|1e-41|34.2|342/379| SEG 224->237|eatttalrarteda| BL:PDB:NREP 1 BL:PDB:REP 3->339|3cddB|3e-40|34.1|317/320| RP:PDB:NREP 1 RP:PDB:REP 3->341|3d37A|2e-39|25.5|314/326| RP:PFM:NREP 1 RP:PFM:REP 55->334|PF05954|2e-12|29.3|263/285|Phage_GPD| HM:PFM:NREP 1 HM:PFM:REP 4->334|PF05954|2e-74|27.6|308/332|Phage_GPD| RP:SCP:NREP 2 RP:SCP:REP 3->177|3d37A1|4e-27|27.2|162/166|b.106.1.1| RP:SCP:REP 179->343|1wruA1|5e-49|36.2|149/151|b.106.1.1| OP:NHOMO 70 OP:NHOMOORG 63 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------1-------------------1----------------------1-1----------------------------------------1--1---1--1-------1-------11----------------1----------11--12---------------------31--------1------------------------------------------------------------1-----------------------1--1---1-111----1-1--1--11-----1--------1----21---------------111--11111111112--1----------------------------------------------111--1-----11---------------2--2------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ----------------------------1----------------------11----------------------------------------------------------------------------------------------1--------------------------- STR:NPRED 342 STR:RPRED 95.3 SQ:SECSTR #cccEEEEETTEEEccccEEEEEEEccccccEEEEEEcccTTccGGGccccccccTTcEEEEEETTEEEEEEEEEEEEEEEETTEEEEEEEEEETHHHHHHcccccccccTccHHHHHHHHHTTcTTcEEEEcccccccccccccTTccHHHHHHHHHHHTTcEEEEcTTccEEEEcccTTccccEEEETccccEEEEEEccTTcccEEEEEEccccccEEEEEEcTTcccccEEEETccccccEEEEccccHHHHHHHHHHHHHHHHHHTEEEEEEEEEEccccTTcccccTTcEEEEEETTTTEEEEEEEEEEEEEEETTTEEEEEEEEEETTcccTTccc################ DISOP:02AL 1-1,342-360| PSIPRED cccEEEEEEccEEEccEEEEEEEEccccccccEEEEEEccccccccccccccccccccEEEEEEccEEEEEEEEEcccEEEccccEEEEEEEcccccEEEEccccccccccccHHHHHHHHHHHHccEEEEcccccccccEEEEcccccHHHHHHHHHHHcccEEEEccccEEEEEccccccccEEEEEcccEEEEEEEccccccEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEEccEEcccccccccccEEEEEccccccccEEEEEEEEEEEEcccccEEEEEEEccccccccccccccccccccccccccc //