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Shigella flexneri bacteriophage V (bpsf1)
Gene : orf53
DDBJ      :orf53        unknown
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  52/915 : Eukaryota  1/199 : Viruses  9/175   --->[See Alignment]
d.4.1
:116 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   63->107 1bxiB PDBj 5e-09 22.2 %
:RPS:SCOP  45->112 1e7dA2  d.4.1.5 * 2e-05 16.4 %
:RPS:PFM   66->113 PF01844 * HNH 2e-04 46.8 %
:HMM:PFM   64->112 PF01844 * HNH 8.2e-18 51.0 49/52  
:HMM:PFM   14->38 PF08879 * WRC 0.00011 20.0 25/46  
:BLT:SWISS 53->116 MCRA_ECOLI 1e-05 32.8 %

SeqInfo AminoSeq See neighboring genes
Links Genpept Abbreviations Back to title page
GT:ID NP_599085.1 GT:GENE orf53 GT:PRODUCT unknown GT:DATABASE NC_003444 GT:ORG bpsf1 GB:ACCESSION NC_003444 GB:LOCATION 36666..37016 GB:FROM 36666 GB:TO 37016 GB:DIRECTION + GB:GENE orf53 GB:PRODUCT unknown GB:PROTEIN_ID NP_599085.1 GB:DB_XREF GI:19549040 GB:GENE:GENE orf53 LENGTH 116 SQ:AASEQ MPPRTPKACRVRGCRNTTTDPSGYCESHKSEGWKQYKPGQSRHQRGYGSKWDVIRVRVLQRDKGLCQLCLRAGVAREAKTVDHIIPKAHGGTDADSNLQSLCWPCHKAKTARERLK GT:EXON 1|1-116:0| BL:SWS:NREP 1 BL:SWS:REP 53->116|MCRA_ECOLI|1e-05|32.8|64/277| RP:PDB:NREP 1 RP:PDB:REP 63->107|1bxiB|5e-09|22.2|45/129| RP:PFM:NREP 1 RP:PFM:REP 66->113|PF01844|2e-04|46.8|47/49|HNH| HM:PFM:NREP 2 HM:PFM:REP 64->112|PF01844|8.2e-18|51.0|49/52|HNH| HM:PFM:REP 14->38|PF08879|0.00011|20.0|25/46|WRC| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01844|IPR002711| GO:PFM GO:0004519|"GO:endonuclease activity"|PF01844|IPR002711| RP:SCP:NREP 1 RP:SCP:REP 45->112|1e7dA2|2e-05|16.4|67/103|d.4.1.5| OP:NHOMO 70 OP:NHOMOORG 62 OP:PATTERN -------------------------------------------------------------------- ------1-------1------------------------------------------------1-------------------------------------------------------------------------------2--------------------------------------------------------1-1------1--1-------------------------------------------------------12--1-------1-----------------------1-------------------1-------------1-11------2-----------------1-----------------------------------------------------------------------------1-------------------------------------------------------1-------------------111--------------1-----1--------------------------------------111---------------------------------------------------------------------------------------------1------1-2--------------11-----1-1----------111----------------11---------------3------------1--1--1--------------1-1-1-------1-----1--1-----------------3----------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ---------------------------------------------------11----------------------------------------------------1---------1---1---------------------------11-1-1---------------------- STR:NPRED 95 STR:RPRED 81.9 SQ:SECSTR ########ccHHHHHHHTTcccccHHHHHHHHHHHHTTcTTTGGG#####ccHHHHHHHHTTTTccccccGGGccccccEEEEcccTTTTcccccGGEEEEcHHHHHH######## DISOP:02AL 1-6,40-45,47-47,110-117| PSIPRED cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHccccccccccEEEEEEEHHHcccccHHHHHHHHHHHHHHHHHHHHcc //