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Vibriophage VP2 (bpvp2)
Gene : AAR97635.1
DDBJ      :             outer capsid protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  4/915 : Eukaryota  0/199 : Viruses  1/175   --->[See Alignment]
b.68.1b.69.13
:460 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   217->403 2cn3A PDBj 2e-05 34.8 %
:RPS:PDB   128->185 2ebsB PDBj 3e-04 13.8 %
:RPS:PDB   217->418 3a0fA PDBj 2e-14 20.1 %
:RPS:SCOP  217->420 1sntA  b.68.1.1 * 1e-08 15.7 %
:HMM:SCOP  125->449 1sqjA2 b.69.13.1 * 3.4e-26 31.1 %
:HMM:PFM   167->178 PF02012 * BNR 0.00038 58.3 12/12  
:HMM:PFM   311->320 PF02012 * BNR 0.00059 60.0 10/12  
:HMM:PFM   33->102 PF06832 * BiPBP_C 2.3e-07 21.7 69/90  
:BLT:SWISS 43->153 HOC_BPT4 3e-06 24.3 %
:BLT:SWISS 218->431 P2SAF_CYAPA 7e-05 30.8 %
:REPEAT 5|141->186|237->281|286->329|331->373|375->428
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAR97635.1 GT:GENE AAR97635.1 GT:PRODUCT outer capsid protein GT:DATABASE AY505112 GT:ORG bpvp2 GB:ACCESSION AY505112 GB:LOCATION 20439..21821 GB:FROM 20439 GB:TO 21821 GB:DIRECTION + GB:PRODUCT outer capsid protein GB:NOTE similar to bacteriophage RB30 outer capsid protein Hoc deposited under GenBank Accession Number AAM52483 GB:PROTEIN_ID AAR97635.1 GB:DB_XREF GI:40950044 LENGTH 460 SQ:AASEQ MAVYIQGQEVLNIVVHVPNSAPTDLGEFRMAEQLAAKQPQITAQPVGGSIYDSQTLGLSIAANVFGSTAAYQWLVDGAPIQGANSTSFTFVPSGLGTFDVTCEIKAFGPMVTSEVASVTVEQTPVDLTWQVLPAGYGLPSNVSGLVGLNAIGSDGSLVVGAMGMEGMRSTDKGLTWSYIGNGFGTGQTSGTISAICVVGNVVVVGGIAGSNIGVAGRSTNGGVSWTKLPDFLNSGATASAINKILHVGGNKLIALLGSGYAAVSNDLGATWSALPRWLNSGGSDNNTSFFDGAVTATGAIIAVGQNGFASISRNGGVTWSALPRYLGMPTNTSIVAIGVSDTAIVVGGNNGNCAISRNDGVTWSALPLNFGVPIGSGIRDRSIAGASNGTFLVGLSGSPISGNNGYLALSYDDGVTWQQPPRYLGIPNAGYGALVNTIRNIDILTFLVGFTDKRGVRAVR GT:EXON 1|1-460:0| BL:SWS:NREP 2 BL:SWS:REP 43->153|HOC_BPT4|3e-06|24.3|111/376| BL:SWS:REP 218->431|P2SAF_CYAPA|7e-05|30.8|185/333| NREPEAT 1 REPEAT 5|141->186|237->281|286->329|331->373|375->428| SEG 197->216|vvgnvvvvggiagsnigvag| BL:PDB:NREP 1 BL:PDB:REP 217->403|2cn3A|2e-05|34.8|155/728| RP:PDB:NREP 2 RP:PDB:REP 128->185|2ebsB|3e-04|13.8|56/771| RP:PDB:REP 217->418|3a0fA|2e-14|20.1|194/753| HM:PFM:NREP 3 HM:PFM:REP 167->178|PF02012|0.00038|58.3|12/12|BNR| HM:PFM:REP 311->320|PF02012|0.00059|60.0|10/12|BNR| HM:PFM:REP 33->102|PF06832|2.3e-07|21.7|69/90|BiPBP_C| RP:SCP:NREP 1 RP:SCP:REP 217->420|1sntA|1e-08|15.7|204/352|b.68.1.1| HM:SCP:REP 125->449|1sqjA2|3.4e-26|31.1|302/0|b.69.13.1|1/1|Oligoxyloglucan reducing end-specific cellobiohydrolase| OP:NHOMO 5 OP:NHOMOORG 5 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------- STR:NPRED 300 STR:RPRED 65.2 SQ:SECSTR ###############################################################################################################################ccE##EcccTTccTTcEEEEEEccccTTcEEEEEccccEEEEEEcccEEEETTcccTTcccEEEEccEEEcccccTTcEEEEcccccEEEEccTTcccEEcccccTTccTTcccEEEEcTTcccEEEEcccccccEEccTTcccccccccccccEEEccccccEEEccccTTcEEEEETTEEEEEccTTcccEEEccTccccccccEEEEEccccTEEEEETTTEEEEEccTTcccEEcTcTcTTTcEEEEEEEEccccTTcccEEEEEEEccTTcccEEEEEccTTcccEEEEHHHTcTHH############################### DISOP:02AL 278-282,369-380,459-461| PSIPRED cEEEEccccEEEEEEEEcccccccccEEEEEccccccccEEEEcccccEEEccccEEEEEEEEcccccEEEEEEEccEEEcccccEEEEEEcccccEEEEEEEEEEEcccEEEEEEEEEEEcccHHHcccccccccEEEccccEEEEEEEEEccccccccccccccEEccccccEEEEcccccccccccccEEEEEEcccEEEEEEEccccEEEEEEcccccEEEEEEcccccccccccccccEEEcccccEEEEEcccEEEEEEcccccEEEccccccccccccccccEEEEEEccccccccccccEEEEcccccccccccccccccccccEEEEEEEcccEEEEEEcccEEEEEEcccccEEEEEccccccccccccEEEEEEccccEEEEEccccccccccccEEEEEccccEEEcccccccccccccccHHccccccEEEEEEEEcccccccEEcc //