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Vibriophage VP2 (bpvp2)
Gene : AAR97638.1
DDBJ      :             integrase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  14/915 : Eukaryota  1/199 : Viruses  4/175   --->[See Alignment]
a.4.5c.37.1d.114.1d.264.1
:762 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   228->331 1jb9A PDBj 2e-04 33.3 %
:RPS:PDB   445->592 1d2nA PDBj 8e-05 13.7 %
:RPS:PDB   681->735 1dp7P PDBj 4e-06 16.7 %
:RPS:SCOP  18->138 1rniA  d.264.1.2 * 7e-07 22.3 %
:RPS:SCOP  245->346 1ho5A1  d.114.1.1 * 2e-05 19.6 %
:RPS:SCOP  445->592 1d2nA  c.37.1.20 * 7e-07 13.7 %
:RPS:SCOP  681->735 1dp7P  a.4.5.20 * 6e-07 16.7 %
:HMM:SCOP  18->223 1ro2A_ d.264.1.2 * 6.7e-45 28.0 %
:HMM:SCOP  445->633 1u0jA_ c.37.1.20 * 1.4e-12 18.4 %
:RPS:PFM   28->191 PF09250 * Prim-Pol 4e-11 34.9 %
:RPS:PFM   231->301 PF08707 * PriCT_2 2e-10 42.3 %
:HMM:PFM   25->194 PF09250 * Prim-Pol 2e-28 30.7 153/162  
:HMM:PFM   227->301 PF08707 * PriCT_2 8.7e-25 40.0 75/78  
:HMM:PFM   682->713 PF03288 * Pox_D5 2.3e-05 37.5 32/86  

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAR97638.1 GT:GENE AAR97638.1 GT:PRODUCT integrase GT:DATABASE AY505112 GT:ORG bpvp2 GB:ACCESSION AY505112 GB:LOCATION complement(24673..26961) GB:FROM 24673 GB:TO 26961 GB:DIRECTION - GB:PRODUCT integrase GB:NOTE similar to Vibrio parahaemolyticus phage VP16T putative integrase deposited under GenBank Accession Number AAQ96530 GB:PROTEIN_ID AAR97638.1 GB:DB_XREF GI:40950047 LENGTH 762 SQ:AASEQ MYISAQEIHEIGQIKDFADRVHAAARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACGKRGGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKSSSGKIAKAIDTRGGDEDSCKSHIVAWPSVRDEGEYTWSMPTLGDVPEIPKWISDALGVPWTGNMNRGSEEIDEDDLETRYTPRQIWRMLEYIDPDELEYDEWLAVLQAVHSQYPDDQGYELADRWSQRGARYKPDEVSIRWQSFDEHGTIRVGTLIYFAQKNGFKPNTEPKGAEEPSEDTDSVVAEYNKKFGVVMVGNKLRILMEQFNPDPFQDNFKLMSVQDFKALMANDIVWYGDSKGKSKPVQKSDIWFVNEKRREFVNGLTFMPDKPREVDGCFNVWEGWRYKEVAGDWSLFKKHVKAVVGSQEHYEWLMDWFADALQDPMNPKGCAVVMKGIEGTGKGTIANVFGELFGQHYKHIIQEEQLIGKFNGHLEEALLVFADEVTYGGNKKVAGTLKGLVTEKKLMIERKGLDATPYRNCLRLMIASNEDWFIPAGPHSRRWFVIDVPDSFASDKSYFDAIWKQMENGGYEAMMYELRNREIKSDLRKAPETKLLMEQRARYTTTDSVVEWWADKVEAGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGAKRLTKPAFYAKVERDFKFVDCRPANPHGGPRKRMFEIMNHSACRALLFKMTGIDVGTSDTEE GT:EXON 1|1-762:0| BL:PDB:NREP 1 BL:PDB:REP 228->331|1jb9A|2e-04|33.3|99/307| RP:PDB:NREP 2 RP:PDB:REP 445->592|1d2nA|8e-05|13.7|146/246| RP:PDB:REP 681->735|1dp7P|4e-06|16.7|54/76| RP:PFM:NREP 2 RP:PFM:REP 28->191|PF09250|4e-11|34.9|146/163|Prim-Pol| RP:PFM:REP 231->301|PF08707|2e-10|42.3|71/78|PriCT_2| HM:PFM:NREP 3 HM:PFM:REP 25->194|PF09250|2e-28|30.7|153/162|Prim-Pol| HM:PFM:REP 227->301|PF08707|8.7e-25|40.0|75/78|PriCT_2| HM:PFM:REP 682->713|PF03288|2.3e-05|37.5|32/86|Pox_D5| RP:SCP:NREP 4 RP:SCP:REP 18->138|1rniA|7e-07|22.3|112/210|d.264.1.2| RP:SCP:REP 245->346|1ho5A1|2e-05|19.6|97/188|d.114.1.1| RP:SCP:REP 445->592|1d2nA|7e-07|13.7|146/246|c.37.1.20| RP:SCP:REP 681->735|1dp7P|6e-07|16.7|54/76|a.4.5.20| HM:SCP:REP 18->223|1ro2A_|6.7e-45|28.0|193/210|d.264.1.2|1/1|Prim-pol domain| HM:SCP:REP 445->633|1u0jA_|1.4e-12|18.4|174/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 20 OP:NHOMOORG 19 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------1--2-----------1------------1---------------------1----------------------------------------------------------------1----------------------------------------1----------1--------------1-1-----------------------------1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------- --------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------11----------------------------------------------------------1----------------------------------------------------1------- STR:NPRED 299 STR:RPRED 39.2 SQ:SECSTR ###################################################################################################################################################################################################################################EEEEEEccGGGcccHHHHH###HHHHHcTTTEEEEEEETTTccccccHHHH##HHHTHHHHHHHHHTTcEEEEEEcGGGHHHHHHHHHHHHTccHHHHHHHHHH#################################################################################################################cccccHHHHHHHHHHHHHHHHHHHccEEEEEEEccTTccHHHHHHHHHHHHTccEEEEEcGGGcTTccHHHHHcEEEEEEccHHHHTTccTTTTcccHHHHHHHHHHTT##ccccTTcEEEEEEEEccHHHHHHTTcTTTEEEcccEE########################################################################################EEEHHHHHHHHHHHHHHTTcccccHHHHHHHHHHHcTTcEEEEEccTTc#cEEEE########################### DISOP:02AL 1-4,6-6,201-219,271-273,757-763| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccHHHccccHHHHHHHHHcccccccccEEEEccccccEEEEEEccccccccccHHHHHHHccccccccccEEEcccccEEEEEEcccccccccccccccccccccccccccccEEEcccccccccEEEEccccccccccHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHccccccEEHHHHHHHHHHcccccccccccccccccccccccEEEcccEEEEEEcccHHHHHHHHcccHHHHHHHHcccccccccccccEEEccccccEEccHHHHHHHHccccccEEEEcEEEccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHEEEEEEEcccccHHHHHHHHHHHHccHHEEcccHHHHHHHHHHHHcccEEEEEccccccccccHHHHHHHHccccEEEEEEcccccccccccEEEEEEcccccccccccccEEEEEEEccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccEEEcccccccccccEEccHHHHHHHHHHHHccccccccccc //