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Vibriophage VP2 (bpvp2)
Gene : AAR97639.1
DDBJ      :             DNA polymerase I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  812/915 : Eukaryota  13/199 : Viruses  6/175   --->[See Alignment]
c.55.3e.8.1
:633 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   210->627 1qtmA PDBj 5e-30 30.9 %
:RPS:PDB   17->627 2bdpA PDBj 5e-58 21.9 %
:RPS:SCOP  16->234 2hbjA2  c.55.3.5 * 6e-13 16.0 %
:RPS:SCOP  210->627 1bgxT4  e.8.1.1 * 2e-59 31.5 %
:HMM:SCOP  17->200 1kfsA1 c.55.3.5 * 2.4e-18 29.0 %
:HMM:SCOP  204->627 1t7pA2 e.8.1.1 * 4.1e-68 35.2 %
:RPS:PFM   245->623 PF00476 * DNA_pol_A 4e-35 36.0 %
:HMM:PFM   230->626 PF00476 * DNA_pol_A 4.1e-37 31.8 359/383  
:HMM:PFM   18->191 PF01612 * 3_5_exonuc 1.5e-13 26.5 147/174  
:BLT:SWISS 24->626 DPO1_HAEIN 3e-32 29.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAR97639.1 GT:GENE AAR97639.1 GT:PRODUCT DNA polymerase I GT:DATABASE AY505112 GT:ORG bpvp2 GB:ACCESSION AY505112 GB:LOCATION complement(26951..28852) GB:FROM 26951 GB:TO 28852 GB:DIRECTION - GB:PRODUCT DNA polymerase I GB:NOTE similar to Bordetella bronchiseptica DNA polymerase I deposited under GenBank Accession Number CAE33731 GB:PROTEIN_ID AAR97639.1 GB:DB_XREF GI:40950048 LENGTH 633 SQ:AASEQ MRLDWERTGRRMGFIDLTKYEAWAYDTECTGLKYKVDKVFGFSVATPDGQSGYFDIREQPDAVQWLVEQADSYKGTIVCHNASFDYRMSLHSGIKLPLSQIDDTGIRACCINEHESTIFPWTRGKAGDYSLDYLAKKYVGAQKYAEIYDELAAMFGGKATRKTQMPNLYRAPSGLVRKYACPDAELTLELWLEQQELIAKRGLEKIVAFERKVMPTLIRAEARGVRVDLNYAEQAILKMDGVVRENQAKMFQLAGREFNPNSPKQVREVFGAKEERGVWTSRDGTILERTATGNPCLDADALRAMKDPLAAAVLELRSNIKTKDTFLAKHVVEHSVGGRVYPNINQMKGEDGGTGTGRLSYTGPALQQIPSRNKRIAAIIKPAFLPEEGQLWLDSDMASFEVRIFAHLVAAYNPAIARAYAENPELDLHQWVGDLMGIPRNASYSGQANAKQMNLGMIFNRGDGAVADSLGMPWEWCEFTDKKGDLIRYKKAGPEAKAVIAAYHTQIQGVKTLATRAQKIAEERGWIQTAHGRRLRFPNGYKSYKASGILIQATAADENKENWLRIEDALGSDGSMILNTHDSYSMSVDENWKPIWERVKKAVERQTLRVPLLLEFDGVGKNWAEAKGLIDVH GT:EXON 1|1-633:0| BL:SWS:NREP 1 BL:SWS:REP 24->626|DPO1_HAEIN|3e-32|29.8|540/930| SEG 185->197|eltlelwleqqel| SEG 410->421|aaynpaiaraya| BL:PDB:NREP 1 BL:PDB:REP 210->627|1qtmA|5e-30|30.9|382/539| RP:PDB:NREP 1 RP:PDB:REP 17->627|2bdpA|5e-58|21.9|543/580| RP:PFM:NREP 1 RP:PFM:REP 245->623|PF00476|4e-35|36.0|339/360|DNA_pol_A| HM:PFM:NREP 2 HM:PFM:REP 230->626|PF00476|4.1e-37|31.8|359/383|DNA_pol_A| HM:PFM:REP 18->191|PF01612|1.5e-13|26.5|147/174|3_5_exonuc| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00476|IPR001098| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00476|IPR001098| GO:PFM GO:0006260|"GO:DNA replication"|PF00476|IPR001098| RP:SCP:NREP 2 RP:SCP:REP 16->234|2hbjA2|6e-13|16.0|188/292|c.55.3.5| RP:SCP:REP 210->627|1bgxT4|2e-59|31.5|378/406|e.8.1.1| HM:SCP:REP 17->200|1kfsA1|2.4e-18|29.0|155/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 204->627|1t7pA2|4.1e-68|35.2|369/494|e.8.1.1|1/1|DNA/RNA polymerases| OP:NHOMO 841 OP:NHOMOORG 831 OP:PATTERN -------------------------------------------------------------------- 1111--11111-1--1111-11----11111-1-------111-11-111111--------1-1111---11111111111111----111111111--111-1111111-111111---111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111-11111--1-11-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111-111121111111111111111111111111111111111111111111111111111111111-1---1111-11----11111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111-11-111111111111111111111111111111111111111--11111------1111111111-111111-1111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111-------------------------1111111111--1 --------------1----------------------------------------------------------------------------------------------1--------------1--3-221-213-------1-------------------1----------------1------------------ ------------------------------------------------------11---------------------------------11-----------------------1-----------------------1------------------------------------ STR:NPRED 619 STR:RPRED 97.8 SQ:SECSTR ###HHHHHHHHH#TTcGGGccEEEEEEEccccccTTccccEEEEEETTEEEEEcHHHTTcHHHHHHHHcTTcEEccEEEccHHHHHHHHHTTTcccccEcEEEHHHHHHHHcGGGccHHHHHcTTcccccHHHHHHTTTccccHHHHHcHHHHccTTcccccccGGGcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHTHHHHHHHHHHHHHHcEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHTccccTTcHHHHHHHHHTTTcccccccccccccccEETTEEcccHHHHHHHGGGHHHHHHHHHHHHHHHHHHTHHHHHccTTTcEEccEEEccc###TcccccccEEEcccTTccccccTHHHHGGGGGEEccTTEEEEEEEEccHHHHHHHHHHTcHHHHHHHHTTcHTTccHHHHHHHHHTccGGGccHHHHHHHHHHHHHHHcccHHHHHHHHTccHH#######HHHHHHEEcccTHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcEEEcTTccEEEcGGGGccHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccEEEEEcccEEEEEEGGGHHHHHHHHHHHHHHccccccccEEEEEEEccTTTccccccEE DISOP:02AL 632-634| PSIPRED ccccccHHHHHHHHHHHHHcccEEEEEEccccccEEccEEEEEEEEccccEEEEEcccccccHHHHHHHHccccccEEEEcHHHHHHHHHHccccccccccHHHHHHHHHccccccccHHccccccccccHHHHHHHHccccccHHHHHHHHHcccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcHHHcccccccEEEEEccccccccccccHHHHHHHHHcEEcccccEEEEEEccHHHHHHHHHHHHHHcHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHccEEEEEEcccccHHHHHHHHcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEcccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEEEEccHHHHHHHHHHHHHHHHHcccccEEEEEEEEEccHHHHccccccc //