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Vibriophage VP2 (bpvp2)
Gene : AAR97641.1
DDBJ      :             superfamily II DNA/RNA helicase
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  220/915 : Eukaryota  157/199 : Viruses  3/175   --->[See Alignment]
c.37.1
:472 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->430 1z6aA PDBj 5e-22 30.0 %
:RPS:PDB   3->464 1c4oA PDBj 4e-20 10.3 %
:RPS:SCOP  1->234 1z63A1  c.37.1.19 * 4e-16 26.0 %
:RPS:SCOP  232->462 1z3iX1  c.37.1.19 * 2e-13 21.1 %
:HMM:SCOP  1->223 1z3iX2 c.37.1.19 * 2.8e-35 24.1 %
:HMM:SCOP  119->466 1z5zA1 c.37.1.19 * 1e-27 24.1 %
:RPS:PFM   22->249 PF00176 * SNF2_N 2e-13 31.1 %
:HMM:PFM   13->283 PF00176 * SNF2_N 9.1e-26 26.2 263/297  
:HMM:PFM   351->423 PF00271 * Helicase_C 6.7e-07 20.0 70/78  
:BLT:SWISS 22->453 Y018_MYCGE 2e-21 28.6 %

SeqInfo AminoSeq See neighboring genes
Links DAD DDBJ Abbreviations Back to title page
GT:ID AAR97641.1 GT:GENE AAR97641.1 GT:PRODUCT superfamily II DNA/RNA helicase GT:DATABASE AY505112 GT:ORG bpvp2 GB:ACCESSION AY505112 GB:LOCATION complement(30863..32281) GB:FROM 30863 GB:TO 32281 GB:DIRECTION - GB:PRODUCT superfamily II DNA/RNA helicase GB:NOTE similar to Clostridium thermocellum ATCC27405 superfamily II DNA/RNA helicases GB:PROTEIN_ID AAR97641.1 GB:DB_XREF GI:40950050 LENGTH 472 SQ:AASEQ MEHQTQAMRKAWNKTEFALFMEMGTGKTFTTIALAGHRFNQRQIDGVLVIVPTPIKPVWEWEVRDMSPVPSIAHVHDSGGDKETMRFIESEHEDKLKYLVIGVEALSQGKAHELALAFVRKHNALVVVDESSRIKNADAARTKKAIRCGDSAAYRMILTGTPITQGIIDLFGQFRFLGEHIIGLKSFFVFRNMYCIMGGFQGKKVLGYQREEELMDKIAPYVYQVKKTECLDLPEKVYRSITVSPTKEQLSAMKELKDFFETEQDGDVLTVSTVLDRMTRFQQILGGNFPFLDKDGAYDVKPISGPNPKMDAMLEDIADLDRNAKVIIWARFRAEIEQISKRLREVYGDDSVIEYHGGISESDRKASIPRFQDSSDPSRFFVANQQTAGMGITLTIATFAYYYSNSFSLEQRLQSEDRNHRKGQRNVCTYIDIWCKADADLMVGRALKSKKDLAVLVDEELQRRIATTRRAT GT:EXON 1|1-472:0| BL:SWS:NREP 1 BL:SWS:REP 22->453|Y018_MYCGE|2e-21|28.6|395/1031| BL:PDB:NREP 1 BL:PDB:REP 13->430|1z6aA|5e-22|30.0|380/480| RP:PDB:NREP 1 RP:PDB:REP 3->464|1c4oA|4e-20|10.3|455/504| RP:PFM:NREP 1 RP:PFM:REP 22->249|PF00176|2e-13|31.1|212/265|SNF2_N| HM:PFM:NREP 2 HM:PFM:REP 13->283|PF00176|9.1e-26|26.2|263/297|SNF2_N| HM:PFM:REP 351->423|PF00271|6.7e-07|20.0|70/78|Helicase_C| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00176|IPR000330| GO:PFM GO:0005524|"GO:ATP binding"|PF00176|IPR000330| RP:SCP:NREP 2 RP:SCP:REP 1->234|1z63A1|4e-16|26.0|208/230|c.37.1.19| RP:SCP:REP 232->462|1z3iX1|2e-13|21.1|228/346|c.37.1.19| HM:SCP:REP 1->223|1z3iX2|2.8e-35|24.1|216/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 119->466|1z5zA1|1e-27|24.1|224/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 756 OP:NHOMOORG 384 OP:PATTERN --------------1--------------------------------2--1-1--------------- --1--111111111----------------------1212---1--2-------------111-1-1322-1-------1-1---111111---------1-1--313-22222222-------1----1--11---------21-3112112--111111111112121---1-------1----------112222223222222221-11112222121---122221-2--------------------1------12---------1--------------------------------1------------------22233222222312131---1222-2--11-2---111-----1----21--2--------------1---------------------------------------1-----------------------------------------------------------1-21----------1--------------1---------1-2------1-----2---1--2----1---------1---1113-12111111111--2---1----1-22---------------------------1111----1--1--11111--1--1-1--111------------------------------------1--------------------------------------------------------------------1111------------------------------1-----1---1------------------1--1-------------1-1-----------1--------------1--------------1-----1--------1--------12 ----331-42--33221---1111111---1--1-111-1-11---12331131331-2323124122-31233512-2226564412-231111311131123441134531122331---5-A6-51EO4-65A122-412432213-3--9123532331242-1112--3-1112-122-1A34B16643-3113 ------------------------------------------------------11----------------------------------------------------------1------------------------------------------------------------ STR:NPRED 470 STR:RPRED 99.6 SQ:SECSTR #TTHHHHHHHHHHHHHTTcccccEEEcTTccHcHHHHHHHHHHTccEEEEEccHHHHHHHHHHHHHcTTcEEEEcccGGGTccccEEEGGGTEEEcccccccTTcHcHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHTTcHHcHHHHHHHHHHHHHHHHcccTTGGGGHHHHHTccTTcccccGGGGccTTcEEEEETHHHHHHHHHHHHHHHHHHHHHHcccGGGGGcccccHHHHHHTccEEEEEEccccHHHHHHccccEEEcccTTcccccEEEEEccTHHHHHHHHHHHHHTTcEEEEEcccHHHHHHHHHHHHTTHTTccEEEEcTTccHHHHHHHHHHHHHHHTTcccEEEEcccccTTcccTTEEEEEETcGGGcHHHHHHHHGGGTTccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHH# DISOP:02AL 259-273,462-473| PSIPRED cHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccccccEEEEEHHHHHccHHHHHHHHHHcccccEEEEEcHHHcccccHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHHHcccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccccEEEEEEcccccccccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //